Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   D7D50_RS10025 Genome accession   NZ_CP032620
Coordinates   1993140..1995104 (+) Length   654 a.a.
NCBI ID   WP_120702280.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1988140..2000104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS09990 (D7D50_09990) - 1988424..1989098 (-) 675 WP_120702265.1 response regulator transcription factor -
  D7D50_RS09995 (D7D50_09995) - 1989188..1989763 (-) 576 WP_227877748.1 PepSY domain-containing protein -
  D7D50_RS10000 (D7D50_10000) - 1989927..1990625 (-) 699 WP_120702267.1 3-oxoacyl-ACP reductase -
  D7D50_RS10005 (D7D50_10005) - 1990618..1990854 (-) 237 WP_000141913.1 DUF2829 domain-containing protein -
  D7D50_RS10010 (D7D50_10010) - 1990954..1991784 (-) 831 WP_120702268.1 hypothetical protein -
  D7D50_RS10015 (D7D50_10015) - 1991781..1992581 (-) 801 WP_120702270.1 hypothetical protein -
  D7D50_RS10020 (D7D50_10020) - 1992578..1992904 (-) 327 WP_120702278.1 PadR family transcriptional regulator -
  D7D50_RS10025 (D7D50_10025) amiA 1993140..1995104 (+) 1965 WP_120702280.1 peptide ABC transporter substrate-binding protein Regulator
  D7D50_RS10030 (D7D50_10030) - 1995438..1997429 (-) 1992 WP_120702282.1 FtsX-like permease family protein -
  D7D50_RS10035 (D7D50_10035) - 1997422..1998189 (-) 768 WP_120702284.1 ABC transporter ATP-binding protein -
  D7D50_RS10040 (D7D50_10040) - 1998365..1998622 (-) 258 WP_120702380.1 SemiSWEET family transporter -
  D7D50_RS10045 (D7D50_10045) - 1998902..1999165 (+) 264 WP_003006096.1 SemiSWEET family transporter -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72969.06 Da        Isoelectric Point: 4.7066

>NTDB_id=317161 D7D50_RS10025 WP_120702280.1 1993140..1995104(+) (amiA) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MKKSKLAFLAGVTVASALFLASCGSSAKSSQTNTFSYVYSTDPDSLNYLLSNRSTTSDVTTNLVDGLFENDQYGNLVPAL
AEDWSVSKDGLTYTYKLRKDAKWYDSEGNEYADVTAQDFVTSLKYVADNKSDALYLVQNSVAGLDDYVTGKNTDFSKVGV
KAVDDHTLQYTLAQPESFWNSKLTTSTMMPVNEKFLKSAGKDFGSVKPSGILYNGPYYLKSFTSKSLMEFTKNENYYDKD
NVKIDDIKLTYFDGSDQDYLARNFSDGNLTTARLFPTSSTFSTIEKKFKDNIVYSPQDATVYYVYFNVNRQNYGHTEKTT
DDQKNQTKTALQNKNFRQAINFALDRTSLSAQSNGKDGASKTLRTLLVPPTFVQVDNKDFGTVVEEKLAATGDDWKDVSL
ADAQDSMFNTDKAKAQFAKAKEELQAQGVQFPIHIDYVVDQSSASIVQQADSMKDSIEKTLGKENVVVDVQKLSTEDADN
ATYFAQSPDQKDFDMDIAGWGPDFQDPSTYLDIFNPVDGSALAGMGINPATDQALIEKLGLNEYKQLLDDANAEQLDTNT
RYEKYAVAQAWLTDNAFALPVYSKGAVPSITKIKPFTRAFSLIGIKDGSSYYKYMELQSDVVTTADYEKAYKNWLKEKEK
SNKKAQKELEKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=317161 D7D50_RS10025 WP_120702280.1 1993140..1995104(+) (amiA) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGAAAAAATCTAAACTAGCTTTCCTTGCAGGTGTCACGGTTGCTTCAGCCCTGTTCCTTGCTTCTTGTGGATCATCTGC
AAAGTCTTCTCAGACGAACACTTTTTCATACGTGTATAGCACTGATCCAGACTCTTTGAACTACCTCCTTTCAAACCGTT
CAACAACAAGTGATGTCACAACCAACTTAGTAGATGGACTTTTTGAAAACGACCAATACGGTAACTTGGTCCCTGCACTA
GCGGAAGATTGGTCTGTTTCTAAGGATGGATTGACTTATACTTACAAACTTCGTAAAGATGCAAAATGGTATGACTCAGA
AGGGAACGAATATGCAGATGTCACTGCACAGGACTTCGTCACTTCTCTGAAATACGTAGCAGACAACAAGTCAGATGCCC
TCTACTTGGTTCAAAACTCAGTAGCCGGTCTGGATGACTACGTCACTGGTAAAAATACGGACTTCTCTAAAGTTGGAGTC
AAAGCCGTTGACGACCATACCCTTCAATACACCTTGGCTCAACCTGAGTCTTTCTGGAATTCTAAATTGACAACTTCGAC
CATGATGCCTGTCAATGAAAAATTCCTCAAGTCTGCAGGTAAAGACTTTGGTAGCGTCAAACCTTCTGGAATCCTCTACA
ACGGTCCTTACTACTTGAAATCCTTCACTTCAAAATCGTTGATGGAGTTCACCAAGAACGAGAACTACTACGACAAAGAC
AATGTGAAGATCGATGATATCAAATTGACCTACTTCGATGGTTCTGACCAAGACTACCTAGCTCGTAACTTCTCTGATGG
AAACTTGACCACTGCGCGTCTCTTCCCAACGAGCTCAACCTTCAGTACCATTGAGAAAAAATTCAAGGACAATATCGTTT
ATTCACCGCAAGATGCGACTGTCTACTATGTTTACTTCAATGTAAACCGTCAAAACTACGGTCATACTGAGAAAACAACA
GACGACCAGAAGAACCAAACCAAAACAGCTCTTCAAAACAAAAACTTCCGTCAAGCCATCAACTTTGCCCTTGATCGTAC
TTCTCTAAGTGCCCAATCAAACGGGAAAGATGGGGCTAGCAAAACCCTTCGTACGCTTCTTGTACCTCCAACATTTGTGC
AAGTAGACAACAAAGACTTCGGTACTGTTGTTGAAGAAAAACTTGCTGCAACAGGAGATGATTGGAAGGATGTCAGCCTA
GCTGATGCGCAAGATAGCATGTTCAATACGGACAAGGCTAAAGCACAATTTGCTAAAGCCAAAGAAGAGCTCCAAGCGCA
AGGTGTTCAATTCCCAATCCACATCGACTATGTGGTTGACCAGTCTTCTGCTAGCATTGTGCAACAAGCTGATTCAATGA
AAGACTCCATCGAAAAAACATTAGGAAAAGAAAATGTTGTCGTGGATGTTCAGAAATTGTCTACGGAAGATGCGGACAAT
GCAACCTACTTCGCTCAAAGTCCTGATCAAAAAGACTTTGATATGGATATCGCTGGTTGGGGACCTGACTTCCAAGATCC
ATCAACTTACTTGGATATCTTCAATCCAGTCGATGGTTCAGCCTTAGCAGGTATGGGGATCAATCCAGCAACTGACCAAG
CCCTTATCGAAAAACTTGGTTTGAACGAGTATAAACAACTATTGGATGATGCCAATGCAGAACAATTAGATACCAATACT
CGTTACGAAAAATATGCTGTTGCTCAAGCCTGGTTGACAGACAATGCCTTTGCACTTCCTGTCTACTCTAAAGGTGCTGT
TCCTTCTATCACGAAGATTAAACCATTTACAAGAGCCTTCTCCTTGATCGGTATCAAAGATGGTTCTAGCTACTACAAGT
ACATGGAATTACAAAGTGATGTTGTCACAACTGCCGACTACGAAAAAGCGTATAAGAATTGGCTGAAAGAAAAAGAAAAA
TCCAATAAAAAAGCGCAAAAAGAACTTGAAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.711

100

0.55
  amiA3 Streptococcus thermophilus LMD-9

54.476

100

0.549
  amiA3 Streptococcus thermophilus LMG 18311

54.173

100

0.546

Multiple sequence alignment