Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   D7D50_RS06725 Genome accession   NZ_CP032620
Coordinates   1338591..1340591 (+) Length   666 a.a.
NCBI ID   WP_120701802.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333591..1345591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS06700 (D7D50_06700) trpD 1334158..1335162 (+) 1005 WP_120701797.1 anthranilate phosphoribosyltransferase -
  D7D50_RS06705 (D7D50_06705) trpC 1335159..1335926 (+) 768 WP_120701798.1 indole-3-glycerol phosphate synthase TrpC -
  D7D50_RS06710 (D7D50_06710) - 1335913..1336494 (+) 582 WP_120701799.1 phosphoribosylanthranilate isomerase -
  D7D50_RS06715 (D7D50_06715) trpB 1336491..1337693 (+) 1203 WP_120701800.1 tryptophan synthase subunit beta -
  D7D50_RS06720 (D7D50_06720) trpA 1337696..1338481 (+) 786 WP_120701801.1 tryptophan synthase subunit alpha -
  D7D50_RS06725 (D7D50_06725) amiA3 1338591..1340591 (+) 2001 WP_120701802.1 peptide ABC transporter substrate-binding protein Regulator
  D7D50_RS06730 (D7D50_06730) - 1340706..1343774 (+) 3069 WP_120701803.1 CocE/NonD family hydrolase -
  D7D50_RS06735 (D7D50_06735) trxA 1343869..1344183 (+) 315 WP_006595996.1 thioredoxin -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74109.44 Da        Isoelectric Point: 4.7097

>NTDB_id=317149 D7D50_RS06725 WP_120701802.1 1338591..1340591(+) (amiA3) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MKKRNVIALAGVALLSAGILVACSGGSKPSSSSSKSSEAGQKFSYVYETEPENLNYITSGKAATHEITGNLIDGLFENDK
YGNLIPSLAKDWTVSEDGLTYTYKLRDDAKWYDSEGEEYADVTAEDFVAGIKYAADHKSEMLYIIQNSIKGLNDYVEGKT
SDFSNVGIKAVDDHTLQITLNQAEPFWNSKLTLGITFPINEKFVESKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMS
KNENYWDKDNVHITDVKLEYYDGQDQSKLANSFEDNALSLAKLFPTGPGFTDQAKKFKDEIIYTPQDASTFVIGVNIDRQ
SYKYTSKTTDEEKSSTKKALLNKDFRQAISFAFDRESYAAQANGKDGASKLIRNLYIPPTFVQADGKTFGEMVKTELVTY
GDEWKDANLDDGQNGLYNAKQAKEEFAKAKSALEADGVKFPIHLDMPVDQTTQSKVQRAQSFKQSVESTLGKENVVVDIH
MVSKEDLLNVTLFAAKAEDEDWDISDNVGWSPDYQDPSTYLDILKASSGENTRTFLGFDPSENNEAAKKVGLYDFEKMVT
EAGAETKDLNKRYEKYAVAQAWLTDSALVIPTTSKTGRPFLTRVVPFSAPFGWTGGKGKDNVVYKGMELQDKAVTTEDYN
KALEKWKKEQAESNQKAQEELKDHVK

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=317149 D7D50_RS06725 WP_120701802.1 1338591..1340591(+) (amiA3) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGAAAAAAAGAAATGTCATTGCTCTTGCAGGAGTAGCTCTTCTTTCAGCAGGTATTCTTGTAGCATGTTCCGGTGGTTC
TAAACCATCAAGCTCAAGCTCAAAATCAAGTGAAGCAGGTCAAAAATTCTCTTACGTTTACGAGACAGAACCTGAAAACT
TGAACTACATCACATCTGGTAAAGCTGCAACCCATGAAATCACAGGAAACTTGATTGATGGATTGTTTGAAAACGACAAG
TATGGGAATTTGATTCCTTCACTTGCTAAAGATTGGACAGTTTCAGAAGATGGCTTGACTTATACTTACAAACTTCGTGA
TGATGCCAAATGGTATGATTCAGAAGGGGAAGAGTATGCGGACGTGACAGCTGAAGACTTCGTTGCAGGGATCAAGTATG
CCGCTGACCACAAGTCTGAAATGCTCTACATCATTCAAAACTCTATCAAGGGCTTGAATGATTATGTTGAAGGTAAGACT
TCAGACTTCTCAAATGTAGGCATTAAAGCAGTCGATGATCATACCCTTCAAATCACTTTGAACCAAGCAGAGCCTTTCTG
GAATTCTAAGTTGACTCTTGGAATCACTTTCCCAATCAACGAGAAATTCGTAGAATCTAAAGGGGATAAATTTGCCCAAG
CAAGTGACACGAGCTCACTTCTTTACAATGGTCCTTACATCTTGAAGAGCTTCACTTCTAAATCATCTATCGAGATGAGC
AAGAATGAAAACTACTGGGATAAGGATAACGTCCACATCACAGATGTTAAGCTAGAATACTATGATGGTCAAGACCAAAG
TAAATTGGCCAACTCATTTGAGGACAACGCTCTTAGCCTTGCTAAATTGTTCCCAACTGGACCTGGATTTACAGACCAAG
CTAAGAAGTTTAAAGATGAAATCATCTACACTCCTCAAGATGCCAGCACCTTCGTTATCGGTGTGAATATCGATCGTCAG
TCTTACAAGTATACTTCAAAAACAACTGATGAAGAAAAATCATCTACTAAGAAAGCTCTTTTGAACAAAGACTTCCGTCA
AGCAATCAGCTTTGCCTTTGACCGTGAATCTTATGCTGCCCAAGCAAATGGTAAAGATGGAGCAAGCAAACTGATCCGTA
ACTTGTACATCCCACCTACATTCGTTCAAGCAGATGGTAAGACCTTCGGTGAGATGGTTAAAACTGAGTTGGTGACTTAT
GGAGACGAGTGGAAAGATGCAAATCTTGACGATGGTCAAAATGGTCTTTACAACGCAAAACAAGCTAAAGAAGAGTTTGC
AAAAGCAAAATCTGCACTTGAAGCAGACGGTGTGAAATTCCCAATTCACTTGGATATGCCAGTAGACCAAACGACTCAAT
CTAAGGTTCAACGTGCTCAATCTTTCAAACAATCGGTTGAAAGTACGCTTGGAAAAGAAAACGTCGTTGTCGACATCCAT
ATGGTATCCAAAGAAGACCTCTTGAACGTGACCCTCTTTGCTGCTAAAGCAGAAGACGAAGACTGGGATATCTCAGATAA
CGTTGGATGGAGCCCTGACTATCAAGACCCATCAACTTACCTTGATATCTTGAAAGCATCTTCTGGTGAAAACACTCGTA
CCTTCCTTGGATTTGACCCAAGCGAAAACAATGAAGCAGCTAAGAAAGTTGGCTTGTACGACTTTGAGAAGATGGTAACA
GAAGCAGGAGCTGAAACCAAAGACCTTAACAAACGTTATGAGAAATATGCGGTAGCTCAAGCTTGGTTGACGGATAGTGC
TTTGGTCATCCCAACAACTTCTAAGACTGGTCGTCCATTCTTGACTCGTGTTGTACCATTCTCAGCACCATTTGGCTGGA
CCGGTGGTAAAGGGAAAGACAACGTTGTCTATAAAGGCATGGAACTTCAAGACAAGGCTGTAACAACCGAAGACTACAAC
AAAGCTCTTGAAAAATGGAAGAAAGAGCAAGCAGAGTCTAACCAAAAAGCTCAAGAAGAATTAAAAGATCATGTGAAATA
A

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(84-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.372

100

0.565
  amiA3 Streptococcus thermophilus LMG 18311

56.222

100

0.563
  amiA Streptococcus salivarius strain HSISS4

56.072

100

0.562

Multiple sequence alignment