Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D7D50_RS05140 Genome accession   NZ_CP032620
Coordinates   1010958..1011452 (+) Length   164 a.a.
NCBI ID   WP_006595680.1    Uniprot ID   A0A4Z1DUY6
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1005958..1016452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS05115 (D7D50_05115) - 1006854..1007765 (-) 912 WP_120701658.1 DUF4839 domain-containing protein -
  D7D50_RS05120 (D7D50_05120) - 1008024..1008440 (-) 417 WP_120702328.1 hypothetical protein -
  D7D50_RS05125 (D7D50_05125) - 1008421..1009323 (-) 903 WP_120701659.1 phosphodiester glycosidase family protein -
  D7D50_RS05130 (D7D50_05130) - 1009310..1010362 (-) 1053 WP_120701660.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  D7D50_RS05135 (D7D50_05135) rpsF 1010641..1010931 (+) 291 WP_023024266.1 30S ribosomal protein S6 -
  D7D50_RS05140 (D7D50_05140) ssb 1010958..1011452 (+) 495 WP_006595680.1 single-stranded DNA-binding protein Machinery gene
  D7D50_RS05145 (D7D50_05145) rpsR 1011494..1011733 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  D7D50_RS05155 (D7D50_05155) - 1012063..1012581 (+) 519 WP_120701662.1 GNAT family N-acetyltransferase -
  D7D50_RS05160 (D7D50_05160) - 1012620..1013294 (-) 675 WP_023024262.1 DUF1129 family protein -
  D7D50_RS05165 (D7D50_05165) - 1013323..1014267 (-) 945 WP_117744639.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17849.59 Da        Isoelectric Point: 4.7079

>NTDB_id=317140 D7D50_RS05140 WP_006595680.1 1010958..1011452(+) (ssb) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MINNVVLVGRMTRDAELRYTPQNQAVATFSLAVNRNFKNQNGERDADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRANREGQAGGGYASAGGFAGNAAPSFGGSEPSNATPNFGRDDNPFGANPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=317140 D7D50_RS05140 WP_006595680.1 1010958..1011452(+) (ssb) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGATTAACAATGTTGTACTTGTAGGTCGTATGACTCGAGATGCTGAACTTCGTTATACCCCTCAAAATCAGGCTGTTGC
GACATTCTCACTTGCTGTTAACCGTAATTTTAAAAACCAAAATGGTGAACGAGATGCGGACTTTATCAACTGTGTGATTT
GGCGTCAACAAGCTGAAAATTTAGCAAATTGGGCTAAAAAGGGTGCCTTAGTTGGGATTACAGGTCGTATCCAGACTCGT
AATTATGAGAATCAGCAAGGTCAACGTGTTTATGTCACTGAAGTCGTAGCGGACAGCTTCCAATTGTTGGAAAGCCGCGC
GAATCGTGAAGGACAAGCTGGTGGAGGCTATGCTTCAGCTGGAGGATTTGCAGGAAATGCAGCTCCAAGCTTTGGAGGAT
CTGAACCATCGAACGCAACACCAAACTTTGGACGTGATGACAATCCATTCGGAGCTAATCCAATGGACATCTCGGATGAC
GATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Z1DUY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.897

100

0.604
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment