Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   D7D50_RS01620 Genome accession   NZ_CP032620
Coordinates   309179..311161 (-) Length   660 a.a.
NCBI ID   WP_120701309.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   binding to XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 303995..315125 309179..311161 within 0


Gene organization within MGE regions


Location: 303995..315125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS01595 (D7D50_01595) - 303995..304408 (-) 414 WP_120701306.1 YjdF family protein -
  D7D50_RS10175 - 304550..305782 (-) 1233 WP_174705348.1 acyl-CoA thioesterase/BAAT N-terminal domain-containing protein -
  D7D50_RS01610 (D7D50_01610) - 305839..306294 (-) 456 WP_120701307.1 MarR family winged helix-turn-helix transcriptional regulator -
  D7D50_RS01615 (D7D50_01615) leuS 306393..308894 (-) 2502 WP_120701308.1 leucine--tRNA ligase -
  D7D50_RS01620 (D7D50_01620) amiA3 309179..311161 (-) 1983 WP_120701309.1 peptide ABC transporter substrate-binding protein Regulator
  D7D50_RS01630 (D7D50_01630) - 311508..312182 (-) 675 WP_120701310.1 CPBP family intramembrane glutamic endopeptidase -
  D7D50_RS01635 (D7D50_01635) - 312201..312422 (-) 222 WP_120701311.1 hypothetical protein -
  D7D50_RS01640 (D7D50_01640) - 312483..312623 (-) 141 WP_120701312.1 bacteriocin -
  D7D50_RS01645 (D7D50_01645) - 312912..313835 (+) 924 WP_120701313.1 helix-turn-helix domain-containing protein -
  D7D50_RS01650 (D7D50_01650) - 314065..314295 (+) 231 WP_120701314.1 hypothetical protein -
  D7D50_RS01655 (D7D50_01655) - 314292..315125 (+) 834 WP_120701315.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73495.23 Da        Isoelectric Point: 4.7081

>NTDB_id=317116 D7D50_RS01620 WP_120701309.1 309179..311161(-) (amiA3) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MKKGKLLLATGALLLSVSALVACSQGGKSSSSDNQVFSYVYTQDPDTLDYSLSNKRSTSEFTGNAVDGLLEVDKYGNLIP
SLAKDWTVSKDGLTYTYKLRKGVKWVTAEGEEFGEVKAQDFVTGLQHAADKKSSALYLVQQSIKGLDDYVSGKTKDFSTV
GIKAVDDYTVQYTLNQPESFWNSKTTMGILMPVNKEFLDSKGDDYGQGTNPSSILYCGPYLIKAITSKSVVTLEKNPTYW
DADNVKISKVKLTYYDGQDSESLIRGFDNGDYTFARVFPNGSNYKSVEKKHKDDIVFSDQGSSTYNLSFNIDRQAYEITT
KTTDAQKSSTKKAILNKDFRQAIMFAFNRKAYVAQANGEASADKVIRNTFTPPNFVQIDGKDFGESVEKNLEEYGDEWKG
VSVEDGKDTLYNPTKAKEEFAKAKEALQGQGVEFPIHLDLPVSSTYTEGVKQAQSFKQSIESTLGAENVVIDLNMVSEDD
LNRVTYFAENASQQDWDLNNNLGWGPDYTDPSSYLDITSSKNGENANSYFGFDAGTNNAAAKEAGFDEYDQLIEDAHNET
KDVNDRYAKYAKAQAWLTDSALLIPIHSDGASPGVRKTVPYTAAFAWTGHKGQTFNYKYLELQDKVLTTKEYDEAREQWK
KEKEESNKKAQKELESHVED

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=317116 D7D50_RS01620 WP_120701309.1 309179..311161(-) (amiA3) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGAAAAAAGGGAAGCTACTCTTAGCCACCGGCGCTCTGCTTTTGTCTGTAAGCGCACTGGTAGCCTGCTCACAAGGAGG
GAAATCTTCAAGTTCGGACAACCAGGTCTTTAGTTATGTCTATACTCAAGATCCGGATACTTTGGATTATTCACTTTCTA
ATAAACGGTCGACTTCAGAATTTACAGGTAATGCTGTGGATGGTTTGTTAGAAGTTGACAAATATGGCAACTTAATCCCA
TCTCTTGCTAAGGATTGGACTGTTTCAAAAGATGGTCTGACCTATACCTATAAACTTCGTAAAGGGGTTAAATGGGTGAC
CGCTGAAGGGGAAGAATTCGGAGAAGTTAAGGCCCAAGACTTTGTAACGGGGCTTCAGCACGCAGCGGACAAGAAATCTT
CGGCCCTCTATCTCGTCCAACAATCTATCAAAGGGTTGGATGATTATGTCTCAGGGAAAACCAAAGACTTCTCAACAGTT
GGTATCAAAGCTGTCGATGACTATACTGTTCAATACACCTTGAACCAACCAGAAAGTTTCTGGAATTCAAAAACCACCAT
GGGCATTTTGATGCCAGTCAATAAAGAATTCTTAGATTCTAAGGGAGATGACTACGGTCAAGGTACGAACCCTTCTAGTA
TTCTTTATTGTGGTCCTTATTTGATCAAAGCTATCACCTCTAAATCTGTTGTGACGCTTGAAAAGAACCCAACCTATTGG
GATGCGGATAATGTAAAAATTTCTAAGGTTAAGCTGACCTATTATGATGGACAAGATTCAGAATCTTTGATCCGTGGATT
TGATAACGGAGACTATACCTTTGCCCGTGTCTTCCCAAATGGCTCTAACTATAAGAGTGTAGAGAAGAAACACAAAGATG
ACATTGTCTTCAGTGACCAAGGATCCTCTACTTATAACTTGTCTTTCAACATTGACCGTCAAGCTTATGAGATTACGACG
AAGACGACAGATGCTCAAAAGAGCTCAACCAAGAAAGCAATCTTGAATAAAGACTTCCGTCAAGCCATTATGTTTGCCTT
CAACCGCAAGGCCTATGTAGCGCAAGCCAATGGGGAAGCATCTGCAGACAAGGTCATCCGCAACACCTTCACTCCTCCAA
ACTTTGTTCAAATTGATGGCAAAGATTTCGGTGAGTCTGTAGAGAAAAACTTAGAAGAATATGGTGATGAATGGAAAGGT
GTTTCTGTCGAAGATGGAAAAGATACCCTTTACAATCCAACCAAGGCCAAGGAAGAGTTTGCCAAGGCTAAAGAAGCCCT
TCAAGGCCAAGGGGTAGAGTTCCCGATTCATTTGGACCTCCCTGTTTCATCAACCTATACAGAAGGAGTCAAGCAAGCTC
AATCCTTTAAACAGTCGATTGAATCTACCCTAGGAGCAGAAAATGTCGTCATCGACTTGAACATGGTATCTGAGGACGAT
CTTAATCGAGTGACCTACTTTGCTGAAAATGCCTCCCAACAAGACTGGGATTTGAACAACAACTTGGGTTGGGGACCAGA
CTATACGGATCCATCTTCTTACCTAGATATCACAAGCTCTAAGAATGGTGAAAATGCAAATTCTTACTTCGGATTTGATG
CGGGTACTAATAACGCAGCTGCTAAAGAAGCTGGTTTTGACGAATACGATCAATTGATCGAAGACGCGCACAATGAAACC
AAAGATGTCAACGATCGCTATGCAAAATATGCCAAGGCTCAGGCTTGGTTGACAGATAGCGCCCTCTTGATTCCAATTCA
CTCAGATGGTGCATCTCCAGGTGTTCGAAAGACAGTTCCATACACAGCTGCCTTTGCTTGGACAGGACACAAGGGTCAAA
CCTTCAACTACAAGTATCTGGAATTGCAAGACAAAGTCTTGACAACCAAGGAGTACGATGAAGCGCGTGAACAATGGAAG
AAAGAAAAAGAAGAATCCAATAAGAAAGCTCAAAAAGAACTAGAAAGTCACGTAGAAGACTAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

55.371

100

0.555
  amiA3 Streptococcus thermophilus LMG 18311

55.219

100

0.553
  amiA Streptococcus salivarius strain HSISS4

55.152

100

0.552

Multiple sequence alignment