Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   D6Z43_RS15140 Genome accession   NZ_CP032616
Coordinates   3207410..3209011 (+) Length   533 a.a.
NCBI ID   WP_120652979.1    Uniprot ID   A0AAD0TD91
Organism   Pseudomonas sp. DY-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3202410..3214011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6Z43_RS15115 (D6Z43_15115) pgeF 3202455..3203180 (-) 726 WP_120652974.1 peptidoglycan editing factor PgeF -
  D6Z43_RS15120 (D6Z43_15120) rluD 3203177..3204151 (-) 975 WP_120652975.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D6Z43_RS15125 (D6Z43_15125) - 3204299..3205318 (+) 1020 WP_120652976.1 outer membrane protein assembly factor BamD -
  D6Z43_RS15130 (D6Z43_15130) - 3205380..3207011 (-) 1632 WP_120652977.1 NAD+ synthase -
  D6Z43_RS15135 (D6Z43_15135) - 3207184..3207420 (+) 237 WP_120652978.1 PP0621 family protein -
  D6Z43_RS15140 (D6Z43_15140) pilS 3207410..3209011 (+) 1602 WP_120652979.1 PAS domain-containing sensor histidine kinase Regulator
  D6Z43_RS15145 (D6Z43_15145) pilR 3209014..3210351 (+) 1338 WP_120652980.1 sigma-54 dependent transcriptional regulator Regulator
  D6Z43_RS15150 (D6Z43_15150) - 3210417..3210833 (-) 417 WP_120652981.1 type IV pilin protein -

Sequence

Protein


Download         Length: 533 a.a.        Molecular weight: 58782.72 Da        Isoelectric Point: 8.6060

>NTDB_id=317047 D6Z43_RS15140 WP_120652979.1 3207410..3209011(+) (pilS) [Pseudomonas sp. DY-1]
MSADTLPAPTALSAQGRRIFRLYSLYRLLIGVALVVLISSELDDSLLDLARPELFRNASWFYLILNTLIAALVPRPRSMV
QVFSLAVVDVMLLSCLFFAAGGTPSGIANLMVVSVAISNILLRGRIGLLVAAVAAIGLIYLTFYLSISHPQASSQFVQAG
GFGALCFAAALFIQGLSRRLQLSETLAEQRAADVANLEALNAQILERMRTGILVLDPGNQILLANNGAQTLLGKENLKGR
ALDSQCRELLASLQHWLANPTLRPQSLQAFANGPTLQPSFVHLQRGNQLNTLVFLEDISQIAQQAQQLKLASLGRLTAGI
AHEIRNPLGAISHAAQLLQESEELQGPDRRLAHIIQDHSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLTRFASEFRSSS
SPNQTLHLSTLGSTLQTRMDPQQLTQVLTNLVQNGLRYSAKKNAQGQVWLKLFRDAESDLPILEVEDDGDGVPPEQVHNI
FEPFFTTESKGTGLGLYISRELCESNQARLDYKPREQGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1602 bp        

>NTDB_id=317047 D6Z43_RS15140 WP_120652979.1 3207410..3209011(+) (pilS) [Pseudomonas sp. DY-1]
GTGAGCGCTGATACCCTCCCCGCCCCGACAGCACTCAGCGCCCAAGGGCGGCGCATCTTCCGCCTCTACAGCCTGTATCG
GCTGTTGATTGGTGTAGCACTGGTCGTACTGATCTCCAGCGAACTGGACGACAGCCTCCTGGACCTGGCGCGACCGGAGC
TGTTCCGCAATGCCAGCTGGTTCTACCTGATCCTCAATACCCTGATCGCCGCGCTGGTGCCTCGCCCCCGCAGCATGGTG
CAGGTCTTCAGCCTGGCCGTGGTGGACGTAATGCTGTTGTCCTGCCTGTTCTTCGCGGCAGGCGGCACGCCCAGCGGCAT
CGCCAACCTCATGGTGGTTTCGGTCGCCATCTCCAACATCCTGCTGCGCGGGCGCATCGGCCTGCTGGTAGCGGCCGTGG
CGGCGATCGGGCTGATCTACCTGACCTTCTACCTCAGCATCAGCCACCCGCAGGCCTCCAGTCAGTTCGTCCAGGCCGGC
GGCTTCGGCGCGCTGTGCTTCGCCGCGGCACTGTTCATCCAGGGGCTGAGCCGGCGCCTGCAACTCAGCGAAACCCTCGC
GGAGCAGCGCGCGGCCGACGTGGCCAACCTGGAAGCACTTAACGCTCAGATTCTGGAACGCATGCGCACTGGCATCCTGG
TGCTCGACCCGGGCAATCAGATCCTGCTCGCCAACAACGGTGCGCAAACCCTGCTGGGCAAGGAAAACCTGAAAGGCCGC
GCGCTGGACAGCCAATGCCGTGAGCTGCTGGCCAGCCTTCAGCACTGGCTGGCCAACCCCACCCTGCGGCCACAGAGCCT
CCAGGCCTTCGCCAATGGCCCTACCCTGCAACCCAGCTTCGTTCACTTGCAGCGTGGCAATCAGCTAAACACCCTGGTTT
TTCTCGAAGACATCTCGCAAATCGCCCAGCAGGCCCAGCAGCTGAAACTCGCCTCCCTCGGTCGCCTGACTGCAGGCATC
GCCCACGAGATCCGCAACCCCCTGGGCGCCATCAGCCACGCAGCGCAACTCCTGCAGGAGTCGGAAGAGCTCCAGGGCCC
CGATCGGCGGCTGGCGCACATTATCCAGGACCATTCGCGGCGCATGAACCTGGTGATCGAGAACGTGCTCCAACTGTCCC
GACGCCGCCAGTCGGAGCCGCAGTTGCTGGACCTGAAGTACTGGCTCACCCGATTCGCCAGCGAGTTCCGCAGCTCCTCC
AGCCCCAACCAGACCCTGCACCTGTCTACCCTCGGCAGTACGTTGCAGACCCGCATGGACCCCCAACAGTTGACCCAGGT
GCTGACCAACCTGGTGCAGAACGGCCTGCGCTACAGCGCCAAGAAAAACGCCCAGGGCCAGGTCTGGCTCAAGCTGTTCC
GTGATGCCGAAAGCGACCTGCCCATACTTGAAGTGGAGGACGATGGGGACGGCGTCCCGCCCGAGCAGGTGCACAATATC
TTCGAGCCCTTCTTCACCACTGAAAGCAAGGGCACCGGCCTTGGCCTGTACATCTCCCGCGAGCTCTGCGAGAGCAACCA
GGCCCGCCTCGACTACAAACCGCGCGAACAAGGCGGCAGCTGCTTCCGCATCACGTTCGCCCACCCGCGCAAACTGAGCT
GA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(420-526)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.74

97.373

0.63

Multiple sequence alignment