Detailed information NTG0317048

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: D6Z43_RS15145
• Genome accession: NZ_CP032616
• Coordinates: 3209014..3210351 (+)
• Length: 445 a.a.
• NCBI ID: WP_120652980.1
• Uniprot ID: A0AAD0TDB0
• Organism: Pseudomonas sp. DY-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3204014..3215351

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D6Z43_RS15125 (D6Z43_15125)	-	3204299..3205318 (+)	1020	WP_120652976.1	outer membrane protein assembly factor BamD	-
D6Z43_RS15130 (D6Z43_15130)	-	3205380..3207011 (-)	1632	WP_120652977.1	NAD+ synthase	-
D6Z43_RS15135 (D6Z43_15135)	-	3207184..3207420 (+)	237	WP_120652978.1	PP0621 family protein	-
D6Z43_RS15140 (D6Z43_15140)	pilS	3207410..3209011 (+)	1602	WP_120652979.1	PAS domain-containing sensor histidine kinase	Regulator
D6Z43_RS15145 (D6Z43_15145)	pilR	3209014..3210351 (+)	1338	WP_120652980.1	sigma-54 dependent transcriptional regulator	Regulator
D6Z43_RS15150 (D6Z43_15150)	-	3210417..3210833 (-)	417	WP_120652981.1	type IV pilin protein	-
D6Z43_RS15155 (D6Z43_15155)	-	3210830..3214255 (-)	3426	WP_162945839.1	pilus assembly protein	-
D6Z43_RS15160 (D6Z43_15160)	-	3214272..3214784 (-)	513	WP_120652983.1	PilX N-terminal domain-containing pilus assembly protein	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49621.98 Da
• Isoelectric Point: 5.3151

>NTDB_id=317048 D6Z43_RS15145 WP_120652980.1 3209014..3210351(+) (pilR) [Pseudomonas sp. DY-1]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNLKEARDWLAREPFDLCLTDMRLPDGTGLELVQYIQQRHPMVPVAM
ITAYGSLDTAVNALKAGAFDFLTKPVDLGRLRELVNTALRLSAPEDGEQPVDGRLLGTSPPMSALRKQIQKLARSQAPVY
ISGESGSGKELVARLIHEEGPRIDRPFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LAMQVKLLRAIQEKAVRAVGGQQEVVVDVRILSATHRDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPLLAESM
LKRLAQQSGLPAASLAPEALDKLKCYRFPGNVRELENMLERAYTLCEDDQIQARDLRLADATGPAEGGEASLAQIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide

• Length: 1338 bp

>NTDB_id=317048 D6Z43_RS15145 WP_120652980.1 3209014..3210351(+) (pilR) [Pseudomonas sp. DY-1]
ATGACCCGACAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTGCTGGAGATCACCCTCGGGCGGATGAA
GCTCGACACCCGCAGCGCCCGCAACCTCAAGGAAGCCCGCGATTGGCTCGCGCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGTCTGGAACTGGTGCAGTACATCCAGCAGCGCCACCCCATGGTTCCGGTGGCGATG
ATCACCGCCTACGGCAGCCTCGACACCGCGGTGAACGCCCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAACCGGTAGA
CCTTGGCCGGCTGCGCGAACTGGTCAACACCGCCTTGCGCCTGAGCGCCCCGGAAGACGGTGAGCAACCGGTGGACGGTC
GTTTGCTGGGCACCTCGCCGCCCATGAGCGCCCTGCGCAAGCAGATCCAGAAGCTCGCCCGCAGCCAGGCACCGGTGTAC
ATCAGCGGTGAGTCGGGCAGCGGCAAGGAACTGGTGGCGCGGCTGATCCATGAGGAGGGGCCGCGCATCGACCGTCCCTT
CGTACCGGTCAACTGCGGCGCCATCCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGCCATAAGAAGGGCAGCTTCACCG
GTGCGGTGGAAGACAAGCAGGGCCTGTTCCAGGCAGCGAATGGCGGCACCCTCTTCCTCGACGAGGTAGCCGACCTGCCA
CTGGCGATGCAGGTCAAACTGCTGCGCGCCATCCAGGAAAAAGCCGTGCGCGCCGTGGGGGGGCAGCAGGAAGTAGTCGT
GGACGTGCGCATCCTCAGCGCCACCCACAGGGACCTCGCCGCGGAAGTCGCCGCAGGCCGATTCCGCCAGGATCTCTACT
ACCGCCTCAATGTGATTGAACTCAGCGTGCCGCCACTGCGCGAGCGCCGGGAAGACATCCCGCTGCTGGCCGAAAGCATG
CTCAAGCGCCTGGCCCAGCAGAGCGGCCTACCCGCCGCGAGCCTCGCTCCGGAGGCCCTGGACAAGCTCAAGTGCTATCG
CTTTCCCGGTAACGTCCGCGAATTGGAGAACATGCTCGAGCGTGCCTACACGCTCTGCGAAGACGACCAGATCCAGGCAC
GCGACCTGCGCCTGGCCGACGCCACCGGCCCAGCCGAGGGGGGCGAGGCCAGCCTGGCACAGATCGACAACCTGGAAGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCACTCGAAGAAACCCGCTGGAACCGCACGGCGGCGGCGCAACG
CCTGGGCCTGACGTTCCGCTCCATGCGCTATCGCCTGAAGAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Response regulator receiver domain (Response_reg) (7-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	87.865	100	0.879
pilR	Acinetobacter baumannii strain A118	49.673	100	0.512