Detailed information NTG0317041

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: D6Z43_RS09105
• Genome accession: NZ_CP032616
• Coordinates: 1881503..1883728 (-)
• Length: 741 a.a.
• NCBI ID: WP_162945891.1
• Uniprot ID: -
• Organism: Pseudomonas sp. DY-1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1876503..1888728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D6Z43_RS09065 (D6Z43_09065)	-	1876521..1876802 (+)	282	WP_120651625.1	pyrimidine/purine nucleoside phosphorylase	-
D6Z43_RS09070 (D6Z43_09070)	murB	1876881..1877900 (-)	1020	WP_120651626.1	UDP-N-acetylmuramate dehydrogenase	-
D6Z43_RS09075 (D6Z43_09075)	-	1877897..1878361 (-)	465	WP_120651627.1	low molecular weight protein-tyrosine-phosphatase	-
D6Z43_RS09080 (D6Z43_09080)	kdsB	1878361..1879125 (-)	765	WP_120651628.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
D6Z43_RS09085 (D6Z43_09085)	-	1879122..1879307 (-)	186	WP_077525327.1	Trm112 family protein	-
D6Z43_RS09090 (D6Z43_09090)	lpxK	1879348..1880352 (-)	1005	WP_120651629.1	tetraacyldisaccharide 4'-kinase	-
D6Z43_RS09095 (D6Z43_09095)	-	1880352..1880798 (-)	447	WP_120651630.1	biopolymer transporter ExbD	-
D6Z43_RS09100 (D6Z43_09100)	exbB	1880795..1881430 (-)	636	WP_120651631.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
D6Z43_RS09105 (D6Z43_09105)	comA	1881503..1883728 (-)	2226	WP_162945891.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
D6Z43_RS09110 (D6Z43_09110)	-	1883902..1884429 (+)	528	WP_120651633.1	DUF2062 domain-containing protein	-
D6Z43_RS09115 (D6Z43_09115)	-	1884480..1885724 (-)	1245	WP_120651634.1	lipoprotein-releasing ABC transporter permease subunit	-
D6Z43_RS09120 (D6Z43_09120)	lolD	1885726..1886409 (-)	684	WP_120651635.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
D6Z43_RS09125 (D6Z43_09125)	-	1886402..1887652 (-)	1251	WP_120651636.1	lipoprotein-releasing ABC transporter permease subunit	-
D6Z43_RS09130 (D6Z43_09130)	-	1887819..1888403 (+)	585	WP_120651637.1	PilZ domain-containing protein	-
D6Z43_RS09135 (D6Z43_09135)	-	1888413..1888703 (+)	291	WP_120651638.1	phosphodiesterase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 79961.97 Da
• Isoelectric Point: 10.1736

>NTDB_id=317041 D6Z43_RS09105 WP_162945891.1 1881503..1883728(-) (comA) [Pseudomonas sp. DY-1]
MVSGLATLAVGLLLLRWMPVLPPVWWLLLQLILGFALLASRAWRSGLFLLGLGWACMSAQWALDDRLESRLDGQVRWLEG
TVVGLPSTADGVVRFELAALHSSRAQLPGRLRLSWHGGPRVFAGERWRLAVRLKRPRGLVNPATFDYEAWLLARRIGATG
SVKAGERLEAASGPVAWRDSLRHRLLQVDAWGRAGGLAALVLGDGSGLQDRDWRLLQDTGTTHLMVISGQHITLFAGVLY
GLVVVLARNGLWPRSLPWLPWACAMALAGGLGYGVLAGFDVPVQRACVMLGVVLLWRLRFRHLGFLTPLLVALCAVLLAE
PLVVLQPGFWLSFGAVVLLVLAFAGRLGAWRWWATWWRAQWVMGVGLAPLLLALALPISLSGPLANLLAVPWISLVVLPL
ALLGTLLLGIPLLGDALLWLAGGALELLFQILAWTATQVPAWIPTQVPFWGWILGTLGVLLLIAPAGVPLRALGLALLLP
MLFPPQERPARGQAEVRVLDVGQGLSVLVRTHEHAMLYDAGPRRGDFDIGERVVVPTLRGLGLSRLDLLLLSHADSDHSG
GALAVSRGLAVARVLTGELERLPSELGAEACPADLAWTWDGVRFRIWQSPLTGDSNDGSCVLSVEAAGERILLSGDLGAR
GEAAWVASGQPLAARWLVAGHHGSRTSSSGAFLHAVAPEKVLISRGHLNPYGHPHPLVVSRIGALPAEIHDTAKQGHLLL
RLGAGVEPESEREKSVFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=317041 D6Z43_RS09105 WP_162945891.1 1881503..1883728(-) (comA) [Pseudomonas sp. DY-1]
ATGGTTTCGGGGTTGGCCACGCTTGCCGTAGGCCTTCTTTTATTGCGCTGGATGCCTGTCTTGCCGCCTGTCTGGTGGCT
CCTGCTCCAGTTGATTCTCGGATTCGCGCTGCTGGCGTCGCGTGCCTGGCGCAGCGGGCTGTTCCTGCTTGGTCTCGGTT
GGGCTTGCATGAGTGCCCAATGGGCGTTGGACGACCGGTTGGAATCGCGGTTGGACGGCCAGGTGCGCTGGTTGGAAGGA
ACCGTGGTTGGCCTCCCCAGCACGGCTGATGGGGTGGTGCGCTTCGAGCTGGCGGCGCTCCATTCCTCCCGGGCACAATT
GCCTGGCAGGTTGCGGCTGTCCTGGCATGGCGGCCCGCGTGTGTTTGCCGGCGAACGCTGGCGGCTGGCTGTTCGCCTTA
AACGACCGCGTGGTCTCGTGAATCCCGCGACCTTTGACTACGAGGCGTGGCTGCTGGCACGGCGCATAGGGGCAACCGGC
TCGGTCAAGGCCGGGGAGCGACTGGAAGCGGCAAGCGGCCCTGTCGCCTGGCGGGACTCCTTGCGTCATCGTTTGCTGCA
GGTGGATGCCTGGGGACGGGCCGGTGGGCTCGCCGCCTTGGTGCTGGGCGACGGCTCCGGCTTGCAGGATCGGGACTGGC
GCCTGTTACAAGACACGGGGACCACGCACCTGATGGTGATTTCCGGTCAGCACATCACGCTATTCGCGGGTGTCCTTTAC
GGCCTGGTGGTGGTGCTCGCTCGAAACGGACTCTGGCCTCGGTCGCTGCCCTGGCTACCCTGGGCTTGTGCCATGGCTCT
CGCCGGTGGGCTCGGATATGGCGTGCTGGCAGGATTCGATGTGCCGGTGCAGCGAGCTTGCGTGATGCTTGGCGTCGTCT
TGCTCTGGCGTTTGCGCTTTCGCCACCTGGGATTCCTCACGCCTTTGCTGGTGGCGCTGTGTGCCGTATTGCTGGCTGAA
CCATTGGTAGTGCTGCAACCGGGATTCTGGCTTTCCTTTGGTGCTGTGGTCCTGCTGGTGCTGGCCTTTGCCGGGCGGCT
GGGGGCATGGCGCTGGTGGGCGACCTGGTGGCGAGCTCAGTGGGTCATGGGTGTGGGGTTGGCGCCTCTGCTGCTGGCCC
TGGCCTTGCCCATCAGCCTCAGTGGCCCTCTGGCGAACCTGCTGGCGGTGCCCTGGATCAGCCTGGTGGTGCTGCCGCTG
GCGTTGCTAGGCACATTGCTACTTGGCATTCCCCTACTGGGGGATGCATTGCTCTGGTTGGCCGGTGGTGCCCTGGAGTT
GCTGTTCCAGATACTGGCCTGGACGGCGACGCAGGTTCCCGCCTGGATTCCTACGCAAGTTCCGTTCTGGGGTTGGATCC
TCGGAACGCTGGGTGTACTGCTGCTGATTGCCCCGGCTGGCGTGCCGCTGCGTGCGCTGGGGCTGGCGCTGCTATTGCCC
ATGCTGTTCCCGCCGCAGGAGCGCCCGGCACGTGGTCAGGCCGAGGTTCGGGTGCTGGATGTGGGGCAGGGCCTTTCGGT
GCTGGTCCGCACTCACGAGCATGCGATGCTCTACGACGCCGGTCCGCGCCGGGGCGACTTCGATATCGGCGAGCGTGTGG
TAGTTCCGACCCTGCGCGGCCTGGGGTTGTCTCGGCTGGATCTGTTACTGCTCAGTCATGCGGATTCCGATCATTCCGGC
GGCGCCCTGGCCGTAAGTCGGGGGTTGGCGGTGGCGCGGGTGCTGACTGGTGAGCTGGAGCGGCTGCCATCCGAACTGGG
CGCCGAGGCCTGTCCGGCTGATCTGGCCTGGACTTGGGATGGCGTGAGATTCCGAATCTGGCAGTCGCCACTGACAGGCG
ATAGCAATGATGGTTCATGTGTGTTGTCGGTCGAGGCCGCTGGTGAGCGCATCCTGTTGAGTGGCGATCTCGGCGCTCGC
GGTGAAGCCGCCTGGGTCGCCAGTGGCCAGCCACTTGCGGCGCGCTGGCTGGTGGCGGGCCACCATGGCAGCCGAACGTC
CTCCAGTGGCGCGTTCCTGCATGCCGTGGCGCCTGAGAAAGTGCTGATTTCCCGAGGCCACCTGAACCCCTACGGCCATC
CCCATCCGTTGGTCGTTTCGCGAATCGGCGCGCTGCCCGCCGAGATCCATGACACGGCGAAGCAGGGTCATTTGCTGCTG
CGTCTGGGCGCTGGCGTCGAGCCGGAGAGCGAGCGAGAAAAGTCCGTATTCTGGAGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-687)

• Competence protein (Competence) (200-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.304	97.301	0.596
comA	Ralstonia pseudosolanacearum GMI1000	36.582	100	0.37