Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   D6Z43_RS09100 Genome accession   NZ_CP032616
Coordinates   1880795..1881430 (-) Length   211 a.a.
NCBI ID   WP_120651631.1    Uniprot ID   -
Organism   Pseudomonas sp. DY-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1875795..1886430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6Z43_RS09060 (D6Z43_09060) - 1875900..1876442 (+) 543 WP_120651624.1 exonuclease domain-containing protein -
  D6Z43_RS09065 (D6Z43_09065) - 1876521..1876802 (+) 282 WP_120651625.1 pyrimidine/purine nucleoside phosphorylase -
  D6Z43_RS09070 (D6Z43_09070) murB 1876881..1877900 (-) 1020 WP_120651626.1 UDP-N-acetylmuramate dehydrogenase -
  D6Z43_RS09075 (D6Z43_09075) - 1877897..1878361 (-) 465 WP_120651627.1 low molecular weight protein-tyrosine-phosphatase -
  D6Z43_RS09080 (D6Z43_09080) kdsB 1878361..1879125 (-) 765 WP_120651628.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  D6Z43_RS09085 (D6Z43_09085) - 1879122..1879307 (-) 186 WP_077525327.1 Trm112 family protein -
  D6Z43_RS09090 (D6Z43_09090) lpxK 1879348..1880352 (-) 1005 WP_120651629.1 tetraacyldisaccharide 4'-kinase -
  D6Z43_RS09095 (D6Z43_09095) - 1880352..1880798 (-) 447 WP_120651630.1 biopolymer transporter ExbD -
  D6Z43_RS09100 (D6Z43_09100) exbB 1880795..1881430 (-) 636 WP_120651631.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  D6Z43_RS09105 (D6Z43_09105) comA 1881503..1883728 (-) 2226 WP_162945891.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D6Z43_RS09110 (D6Z43_09110) - 1883902..1884429 (+) 528 WP_120651633.1 DUF2062 domain-containing protein -
  D6Z43_RS09115 (D6Z43_09115) - 1884480..1885724 (-) 1245 WP_120651634.1 lipoprotein-releasing ABC transporter permease subunit -
  D6Z43_RS09120 (D6Z43_09120) lolD 1885726..1886409 (-) 684 WP_120651635.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22967.15 Da        Isoelectric Point: 6.8677

>NTDB_id=317040 D6Z43_RS09100 WP_120651631.1 1880795..1881430(-) (exbB) [Pseudomonas sp. DY-1]
MWELVKAGGWMMLPIILCSIAATAIVAERLWTLRISRVSPPHLLGQVWRQIKDKQLNSQKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIDIFGGFMENGMANAPVLAGGIAKALVTTAA
GLIVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEVVQGDREVDFAEEAKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=317040 D6Z43_RS09100 WP_120651631.1 1880795..1881430(-) (exbB) [Pseudomonas sp. DY-1]
GTGTGGGAGTTGGTCAAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGTGTTCCATCGCCGCCACCGCGATCGTTGC
CGAACGCCTGTGGACCCTGCGCATCAGCCGCGTGTCTCCGCCGCACCTGCTGGGCCAGGTCTGGCGCCAGATCAAGGACA
AGCAGCTGAACAGCCAGAAGCTCAAGGAGCTGCGCGCCTCTTCGCCGCTGGGTGAGGTGCTGGCTGCGGGCCTGGCCAAC
TCCAAACATGGCCGCGAAATCATGAAGGAGTGCATCGAGGAAGCTGCCAGTCGGGTCATCCATGAGCTGGAGCGCTACCT
CAATGCCCTTGGCACCATCGCTGCCATGGCGCCGCTACTCGGCCTGCTGGGTACCGTCTTCGGCATGATCGATATATTCG
GCGGCTTCATGGAGAACGGCATGGCCAACGCGCCCGTGCTGGCCGGCGGTATCGCCAAGGCGCTGGTGACCACTGCCGCA
GGCCTGATCGTCGCCATTCCGGCTGTGTTCTTCCACCGTTACCTGCTGCGTCGTGTTGACGAGCTGGTAGTGGCCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAGTGGTCCAAGGCGATCGCGAAGTGGATTTCGCAGAGGAAGCCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.609

98.104

0.81

Multiple sequence alignment