Detailed information NTG0316920

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PA34_RS26115
• Genome accession: NZ_CP032552
• Coordinates: 5445373..5446245 (+)
• Length: 290 a.a.
• NCBI ID: WP_034007824.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PA34
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5440373..5451245

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA34_RS26095 (PA34_026095)	-	5440917..5441615 (-)	699	WP_016254081.1	hypothetical protein	-
PA34_RS26100 (PA34_026100)	-	5441678..5442217 (-)	540	WP_003141352.1	pilin	-
PA34_RS26105 (PA34_026105)	pilB	5442446..5444149 (+)	1704	WP_003141354.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PA34_RS26110 (PA34_026110)	pilC	5444153..5445370 (+)	1218	WP_016254080.1	type II secretion system F family protein	Machinery gene
PA34_RS26115 (PA34_026115)	pilD	5445373..5446245 (+)	873	WP_034007824.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PA34_RS26120 (PA34_026120)	coaE	5446242..5446853 (+)	612	WP_033989050.1	dephospho-CoA kinase	-
PA34_RS26125 (PA34_026125)	yacG	5446850..5447050 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PA34_RS26130 (PA34_026130)	-	5447087..5447296 (-)	210	WP_003094660.1	hypothetical protein	-
PA34_RS26135 (PA34_026135)	-	5447402..5448091 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
PA34_RS26140 (PA34_026140)	-	5448088..5448558 (-)	471	WP_003094664.1	hypothetical protein	-
PA34_RS26145 (PA34_026145)	-	5448555..5448980 (-)	426	WP_021264128.1	GNAT family N-acetyltransferase	-
PA34_RS26150 (PA34_026150)	-	5449113..5449742 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PA34_RS26155 (PA34_026155)	-	5449739..5450188 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
PA34_RS26160 (PA34_026160)	-	5450214..5450384 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31825.82 Da
• Isoelectric Point: 7.0816

>NTDB_id=316920 PA34_RS26115 WP_034007824.1 5445373..5446245(+) (pilD) [Pseudomonas aeruginosa strain PA34]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=316920 PA34_RS26115 WP_034007824.1 5445373..5446245(+) (pilD) [Pseudomonas aeruginosa strain PA34]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCAGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.363	99.655	0.552
pilD	Vibrio campbellii strain DS40M4	53.497	98.621	0.528
pilD	Acinetobacter nosocomialis M2	50.352	97.931	0.493
pilD	Acinetobacter baumannii D1279779	50.352	97.931	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472