Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   D6022_RS12695 Genome accession   NZ_CP032538
Coordinates   2421941..2422234 (+) Length   97 a.a.
NCBI ID   WP_003183466.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MT-B06     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2416941..2427234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS12660 - 2417094..2417732 (+) 639 WP_003183485.1 MBL fold metallo-hydrolase -
  D6022_RS12665 - 2417770..2418015 (-) 246 WP_003183483.1 DUF2626 domain-containing protein -
  D6022_RS12670 - 2418224..2418601 (+) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  D6022_RS12680 - 2418843..2419682 (+) 840 WP_003183480.1 STAS domain-containing protein -
  D6022_RS12685 comGA 2419839..2420903 (+) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  D6022_RS12690 comGB 2420893..2421927 (+) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  D6022_RS12695 comGC 2421941..2422234 (+) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  D6022_RS12700 comGD 2422240..2422677 (+) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  D6022_RS12705 comGE 2422661..2423008 (+) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  D6022_RS12710 comGF 2423034..2423405 (+) 372 WP_003183461.1 competence type IV pilus minor pilin ComGF -
  D6022_RS12715 comGG 2423418..2423783 (+) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  D6022_RS12720 - 2423872..2424054 (+) 183 WP_003183456.1 YqzE family protein -
  D6022_RS12725 - 2424078..2424398 (-) 321 WP_003183454.1 YqzG/YhdC family protein -
  D6022_RS12730 tapA 2424675..2425403 (+) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  D6022_RS12735 sipW 2425400..2425984 (+) 585 WP_003183449.1 signal peptidase I SipW -
  D6022_RS12740 tasA 2426058..2426852 (+) 795 WP_003183447.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10725.62 Da        Isoelectric Point: 9.1200

>NTDB_id=316843 D6022_RS12695 WP_003183466.1 2421941..2422234(+) (comGC) [Bacillus licheniformis strain MT-B06]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPNRAELESEGYIKKNLK
CPNGKAIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=316843 D6022_RS12695 WP_003183466.1 2421941..2422234(+) (comGC) [Bacillus licheniformis strain MT-B06]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTTATCTCCATCCTGCTGTTGATCACCATTCC
GAATGTGACCAAGCATAACCAAAGCATCCAAAAGAAAGGATGCGAAGGATTAATCAATATGGTTCAAGCGCAGATCACGG
CCTATCAGATGGATCATGACGGGAAAACGCCGAACAGGGCGGAGCTTGAATCTGAAGGTTACATAAAAAAGAACTTAAAG
TGTCCGAATGGGAAAGCAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

44.211

97.938

0.433
  comGC Staphylococcus aureus N315

44.211

97.938

0.433

Multiple sequence alignment