Detailed information NTG0031679

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPG27_RS00220
• Genome accession: NC_011333
• Coordinates: 39229..40365 (+)
• Length: 378 a.a.
• NCBI ID: WP_001045858.1
• Uniprot ID: -
• Organism: Helicobacter pylori G27
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34229..45365

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPG27_RS00185 (HPG27_31)	panD	34668..35021 (+)	354	WP_000142221.1	aspartate 1-decarboxylase	-
HPG27_RS00190 (HPG27_32)	-	35024..35326 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HPG27_RS00195 (HPG27_33)	-	35326..36321 (+)	996	WP_000468489.1	PDZ domain-containing protein	-
HPG27_RS00200 (HPG27_34)	comB6	36329..37384 (+)	1056	WP_000786680.1	P-type conjugative transfer protein TrbL	Machinery gene
HPG27_RS00205	comB7	37400..37513 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPG27_RS00210 (HPG27_35)	comB8	37510..38253 (+)	744	WP_000660512.1	virB8 family protein	Machinery gene
HPG27_RS00215 (HPG27_36)	comB9	38253..39236 (+)	984	WP_012552342.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPG27_RS00220 (HPG27_37)	comB10	39229..40365 (+)	1137	WP_001045858.1	DNA type IV secretion system protein ComB10	Machinery gene
HPG27_RS00225 (HPG27_38)	-	40437..41855 (+)	1419	WP_000694877.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPG27_RS00230 (HPG27_39)	gmd	41865..43010 (+)	1146	WP_000659820.1	GDP-mannose 4,6-dehydratase	-
HPG27_RS00235 (HPG27_40)	-	43003..43935 (+)	933	WP_001002458.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42221.75 Da
• Isoelectric Point: 10.0015

>NTDB_id=31679 HPG27_RS00220 WP_001045858.1 39229..40365(+) (comB10) [Helicobacter pylori G27]
MNKWLKGALIVAGGFATITTISLIYHQKPKAPLNNQPSFLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPSRVSNKTNPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=31679 HPG27_RS00220 WP_001045858.1 39229..40365(+) (comB10) [Helicobacter pylori G27]
ATGAATAAGTGGCTTAAGGGGGCGTTGATTGTTGCAGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCTTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCTAAAGAAGAAACTTTTACTAACCCTCCCAGTAGAGTCTCAAA
CAAAACCAACCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTGCTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTTATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAATAAAATGGGCGAATACCGCCTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGAGGTAACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACCGATATATTTTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	94.444	100	0.944