Detailed information NTG0031675

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPG27_RS00200
• Genome accession: NC_011333
• Coordinates: 36329..37384 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786680.1
• Uniprot ID: B5Z6A5
• Organism: Helicobacter pylori G27
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31329..42384

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPG27_RS00170 (HPG27_28)	-	31734..32147 (+)	414	WP_001023005.1	universal stress protein	-
HPG27_RS00175 (HPG27_29)	-	32178..32453 (+)	276	WP_000784906.1	ATP-dependent Clp protease adaptor ClpS	-
HPG27_RS00180 (HPG27_30)	-	32453..34678 (+)	2226	WP_001051489.1	ATP-dependent Clp protease ATP-binding subunit	-
HPG27_RS00185 (HPG27_31)	panD	34668..35021 (+)	354	WP_000142221.1	aspartate 1-decarboxylase	-
HPG27_RS00190 (HPG27_32)	-	35024..35326 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HPG27_RS00195 (HPG27_33)	-	35326..36321 (+)	996	WP_000468489.1	PDZ domain-containing protein	-
HPG27_RS00200 (HPG27_34)	comB6	36329..37384 (+)	1056	WP_000786680.1	P-type conjugative transfer protein TrbL	Machinery gene
HPG27_RS00205	comB7	37400..37513 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPG27_RS00210 (HPG27_35)	comB8	37510..38253 (+)	744	WP_000660512.1	virB8 family protein	Machinery gene
HPG27_RS00215 (HPG27_36)	comB9	38253..39236 (+)	984	WP_012552342.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPG27_RS00220 (HPG27_37)	comB10	39229..40365 (+)	1137	WP_001045858.1	DNA type IV secretion system protein ComB10	Machinery gene
HPG27_RS00225 (HPG27_38)	-	40437..41855 (+)	1419	WP_000694877.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39778.77 Da
• Isoelectric Point: 8.8165

>NTDB_id=31675 HPG27_RS00200 WP_000786680.1 36329..37384(+) (comB6) [Helicobacter pylori G27]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALWFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNLSNHVLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=31675 HPG27_RS00200 WP_000786680.1 36329..37384(+) (comB6) [Helicobacter pylori G27]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTTGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTAACAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGTAACCTTTCTAACCATGTGCTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTTCTG
TTTGCAATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCAGTTACTAAGGCTTTGATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

3D structure

• AlphaFold DB: B5Z6A5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.581	100	0.966