Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   E5Q08_RS11505 Genome accession   NZ_CP038987
Coordinates   2271738..2273753 (+) Length   671 a.a.
NCBI ID   WP_027480336.1    Uniprot ID   -
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2266738..2278753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Q08_RS11480 - 2266992..2267579 (+) 588 WP_010888898.1 glycerol-3-phosphate acyltransferase -
  E5Q08_RS11485 - 2267576..2269663 (+) 2088 WP_010888899.1 hypothetical protein -
  E5Q08_RS11490 - 2269718..2270182 (+) 465 WP_027480337.1 NUDIX hydrolase -
  E5Q08_RS11495 - 2270179..2270667 (+) 489 WP_010888901.1 DNA topology modulation protein FlaR -
  E5Q08_RS11500 - 2270839..2271600 (+) 762 WP_010888902.1 class I SAM-dependent methyltransferase -
  E5Q08_RS11505 uvrB 2271738..2273753 (+) 2016 WP_027480336.1 excinuclease ABC subunit UvrB Machinery gene
  E5Q08_RS11510 - 2274008..2274703 (-) 696 WP_034351086.1 amino acid ABC transporter permease -
  E5Q08_RS11515 - 2274714..2275481 (-) 768 WP_027480335.1 ABC transporter substrate-binding protein -
  E5Q08_RS11520 - 2275603..2276862 (+) 1260 WP_051618922.1 zinc-dependent alcohol dehydrogenase -
  E5Q08_RS11525 - 2276935..2278206 (-) 1272 WP_051618921.1 uracil-xanthine permease family protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75365.59 Da        Isoelectric Point: 4.9809

>NTDB_id=316632 E5Q08_RS11505 WP_027480336.1 2271738..2273753(+) (uvrB) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2]
MLKVRSEFKPSGDQPTAIASLVDGLESGLRYQTLLGATGTGKTYSMAKVIEEVQRPALIMAPNKILTAQLASEFREFFPD
AAVEFFISYYDYYQPEAYVPGKDLFIEKDASVNQEIERLRHSTTRSLLTRRDTIVVASVSCIYGLGDPKEYTALNAIVKK
GGVMPRDELLGRLVNMQYERNDIELMPGRFSVKGETVTVWPAYDEQPLRIELWGDDVERISVVHPLTGERLGDLDATVVY
PAKHYVSSAGNIERAIGSIQQELDERLEYFHSVGKLLEAQRLKERTLYDLEMLKVLGYCSGIENYSRHIDGRAPGATPYT
MLDYFPDDFITFIDESHVTVPQIGGMANGDRARKQTLVDYGFRLPSAMDNRPLNFEEFLSKTGQTVFVSATPGPFENQVS
DSVADQIIRPTGLVDPEVTIRPIQGQIEDLLGRVRERTAAGERTLVTTLTKRMSEDLTEYLLEKGVKARYLHSDIDSVER
QVIIRDLRLGHYDVLVGINLLREGLDLPEVSLVAILDADKPGFLRSDRALIQTIGRAARNVNGEVILYADVVTPAMRFAM
DETARRREKQLAYNEEHGITPRTVIKGVRDVIRGEELEGEISSENVSGDRDSLTAQLTDLELDMWQASEAMDFEKAASLR
DQIRAIEAKLQGKEFKQATVPGQKARRKGRR

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=316632 E5Q08_RS11505 WP_027480336.1 2271738..2273753(+) (uvrB) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2]
ATGCTCAAAGTCCGCTCCGAATTCAAACCGTCCGGCGACCAGCCCACCGCCATCGCGTCCCTGGTGGACGGACTGGAAAG
TGGGCTGAGGTATCAGACCCTGCTGGGCGCGACGGGCACCGGCAAGACCTACTCCATGGCGAAAGTCATCGAGGAAGTGC
AGCGCCCCGCCCTGATCATGGCGCCCAACAAGATTCTGACCGCGCAGCTCGCCTCCGAGTTCCGCGAGTTCTTCCCCGAC
GCCGCCGTCGAGTTTTTCATCTCCTACTACGACTACTACCAACCCGAAGCATACGTGCCCGGCAAAGACCTCTTCATCGA
GAAAGACGCCAGCGTCAACCAGGAAATCGAGAGATTGCGCCACTCCACCACCCGCAGCTTGCTTACCCGGCGCGACACCA
TCGTGGTGGCGTCGGTGTCGTGCATCTACGGCCTGGGCGACCCCAAGGAATACACCGCGCTCAACGCCATTGTGAAAAAG
GGCGGCGTGATGCCGCGCGACGAGCTGCTCGGGCGGCTGGTCAACATGCAGTACGAGCGCAACGACATCGAGCTGATGCC
GGGGCGCTTCTCGGTCAAGGGCGAGACGGTGACGGTGTGGCCCGCCTACGACGAGCAGCCGCTCCGCATCGAACTGTGGG
GTGACGACGTGGAGCGCATCAGCGTGGTGCATCCGCTGACCGGCGAGCGGCTGGGCGACCTCGACGCCACGGTGGTCTAC
CCCGCCAAGCACTACGTGAGCAGCGCGGGCAACATCGAGCGCGCCATCGGGAGCATTCAGCAGGAACTCGACGAGCGGCT
GGAATATTTTCACTCGGTGGGCAAGTTGCTCGAGGCGCAGCGGCTCAAGGAGCGCACCCTCTACGACCTGGAGATGCTCA
AGGTGCTGGGCTACTGCTCGGGCATCGAGAACTACTCGCGCCACATCGATGGCCGCGCGCCGGGCGCCACACCCTACACC
ATGCTCGACTACTTTCCCGACGACTTCATCACCTTCATCGACGAGTCGCATGTCACCGTGCCGCAAATCGGCGGGATGGC
GAACGGCGACCGCGCGCGCAAGCAGACGCTGGTGGACTACGGCTTCCGGCTGCCCTCGGCGATGGACAACCGCCCACTGA
ACTTCGAGGAGTTCCTGAGCAAGACCGGGCAAACGGTGTTCGTGTCGGCCACCCCCGGCCCCTTCGAGAACCAGGTCAGC
GACAGCGTGGCCGACCAGATTATTCGCCCGACCGGGCTGGTGGACCCCGAGGTGACCATCCGGCCCATTCAGGGGCAAAT
CGAAGACCTGCTGGGGCGGGTGCGCGAGCGGACGGCGGCGGGCGAGCGCACGCTGGTCACCACCCTCACCAAGCGGATGT
CCGAAGACCTGACCGAGTACCTGCTGGAAAAGGGCGTCAAGGCGCGGTATCTGCACTCGGACATCGACTCGGTGGAACGT
CAGGTGATTATCCGCGACCTGCGCCTGGGGCATTACGACGTACTGGTGGGCATCAACCTGCTGCGTGAGGGGCTCGACCT
TCCCGAAGTCTCGCTGGTCGCCATTCTGGACGCCGACAAGCCGGGTTTCCTGCGTTCGGACCGCGCCCTCATCCAGACCA
TTGGCCGCGCCGCCCGCAACGTGAACGGCGAGGTGATCTTGTACGCCGACGTGGTGACACCCGCCATGCGCTTTGCGATG
GACGAAACCGCCCGCCGCCGCGAAAAGCAGCTGGCCTACAACGAGGAGCACGGCATCACCCCGCGCACCGTCATCAAGGG
CGTGCGCGACGTGATTCGCGGTGAGGAACTGGAAGGCGAAATCAGCAGTGAGAACGTCTCGGGCGACCGCGACAGCCTGA
CCGCGCAGCTCACCGACCTCGAACTCGACATGTGGCAGGCGTCCGAGGCGATGGACTTCGAGAAGGCCGCCAGTCTGCGC
GACCAGATTCGCGCCATCGAAGCCAAGCTCCAGGGCAAGGAGTTCAAGCAGGCGACGGTGCCGGGGCAGAAGGCACGGCG
GAAAGGGCGGCGCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(616-648)

UvrB interaction domain (UvrB_inter)

(158-245)

Ultra-violet resistance protein B (UvrB)

(547-588)

Type III restriction enzyme, res subunit (ResIII)

(9-89)

Helicase conserved C-terminal domain (Helicase_C)

(434-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

58.168

97.615

0.568
  uvrB Streptococcus pneumoniae R6

58.168

97.615

0.568
  uvrB Streptococcus pneumoniae D39

58.168

97.615

0.568