Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   SaO326_RS07875 Genome accession   NZ_CP032481
Coordinates   1582823..1583320 (-) Length   165 a.a.
NCBI ID   WP_029656266.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O326     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1577823..1588320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO326_RS07850 (SaO326_01430) gcvPB 1577985..1579457 (-) 1473 WP_120672853.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  SaO326_RS07855 (SaO326_01431) gcvPA 1579450..1580796 (-) 1347 WP_000019686.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SaO326_RS07860 (SaO326_01432) gcvT 1580816..1581907 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  SaO326_RS07865 (SaO326_01433) - 1582066..1582590 (-) 525 WP_001015120.1 shikimate kinase -
  SaO326_RS07870 - 1582580..1582726 (-) 147 WP_001789879.1 hypothetical protein -
  SaO326_RS07875 (SaO326_01434) comGF 1582823..1583320 (-) 498 WP_029656266.1 competence type IV pilus minor pilin ComGF Machinery gene
  SaO326_RS07880 (SaO326_01435) comGE 1583238..1583537 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  SaO326_RS07885 (SaO326_01436) comGD 1583524..1583970 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  SaO326_RS07890 (SaO326_01437) comGC 1583948..1584259 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SaO326_RS07895 (SaO326_01438) comGB 1584273..1585343 (-) 1071 WP_000776417.1 competence type IV pilus assembly protein ComGB Machinery gene
  SaO326_RS07900 (SaO326_01439) comGA 1585315..1586289 (-) 975 WP_000697233.1 competence type IV pilus ATPase ComGA Machinery gene
  SaO326_RS07905 (SaO326_01440) - 1586341..1586964 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SaO326_RS07910 - 1586961..1587290 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SaO326_RS07915 (SaO326_01441) - 1587290..1588276 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19154.82 Da        Isoelectric Point: 10.2192

>NTDB_id=316343 SaO326_RS07875 WP_029656266.1 1582823..1583320(-) (comGF) [Staphylococcus aureus strain O326]
MILSKVTNKFVLFQKILLLIKRHVYSINVKAFSLIEMLVAMLVISITLLIVPDLIRLSKTFLNESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMLNNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=316343 SaO326_RS07875 WP_029656266.1 1582823..1583320(-) (comGF) [Staphylococcus aureus strain O326]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACTACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGTTGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAAATGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAACAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGCTTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(63-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

95.152

100

0.952
  comGF Staphylococcus aureus MW2

95.152

100

0.952

Multiple sequence alignment