Detailed information NTG0316297

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: D4I21_RS06985
• Genome accession: NZ_CP032479
• Coordinates: 1419651..1420631 (-)
• Length: 326 a.a.
• NCBI ID: WP_139543448.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 21-F-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1414651..1425631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4I21_RS08010	-	1414692..1414910 (+)	219	Protein_1313	anthranilate synthase component I	-
D4I21_RS06965	-	1414938..1415870 (-)	933	WP_139543444.1	GDP-L-fucose synthase	-
D4I21_RS06970	gmd	1415863..1417008 (-)	1146	WP_139543445.1	GDP-mannose 4,6-dehydratase	-
D4I21_RS06975	-	1417039..1418451 (-)	1413	WP_139543446.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4I21_RS06980	comB10	1418522..1419658 (-)	1137	WP_139543447.1	DNA type IV secretion system protein ComB10	Machinery gene
D4I21_RS06985	comB9	1419651..1420631 (-)	981	WP_139543448.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4I21_RS06990	comB8	1420631..1421374 (-)	744	WP_001208388.1	virB8 family protein	Machinery gene
D4I21_RS06995	comB7	1421371..1421484 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4I21_RS07000	comB6	1421500..1422555 (-)	1056	WP_139543449.1	P-type conjugative transfer protein TrbL	Machinery gene
D4I21_RS07005	-	1422563..1423558 (-)	996	WP_139543450.1	PDZ domain-containing protein	-
D4I21_RS07010	-	1423558..1423859 (-)	302	Protein_1323	YbaB/EbfC family nucleoid-associated protein	-
D4I21_RS07015	panD	1423862..1424215 (-)	354	WP_139543451.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37538.30 Da
• Isoelectric Point: 9.5437

>NTDB_id=316297 D4I21_RS06985 WP_139543448.1 1419651..1420631(-) (comB9) [Helicobacter pylori strain 21-F-EK1]
MRKVLYALMGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQNKENMAENAPKDAPINNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLWA
CSKKSKLSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFV
KKGKDE

Nucleotide

• Length: 981 bp

>NTDB_id=316297 D4I21_RS06985 WP_139543448.1 1419651..1420631(-) (comB9) [Helicobacter pylori strain 21-F-EK1]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTATTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCACATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTAAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATCGGCGTGGATTCTAATATCAGCGTGATTGATAGTGAGGGCAAAA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTTATAGAAGATAAAAAT
TATTATTCTAACGCTTTTTTGAAGCCCCAAAATAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCCATAAACAA
CAAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACCATTGGCGATAACACCAACGCGA
TGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTATGGGCT
TGTTCTAAAAAATCCAAACTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATTTGACAA
AAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGG
GCGATTACATTATCGCTGAAGACGTCTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGCATCCGTTTTGTC
AAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-317)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	96.012	100	0.96