Detailed information NTG0316296

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4I21_RS06980
• Genome accession: NZ_CP032479
• Coordinates: 1418522..1419658 (-)
• Length: 378 a.a.
• NCBI ID: WP_139543447.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 21-F-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1413522..1424658

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4I21_RS08005	-	1414150..1414536 (+)	387	WP_236635464.1	hypothetical protein	-
D4I21_RS08010	-	1414692..1414910 (+)	219	Protein_1313	anthranilate synthase component I	-
D4I21_RS06965	-	1414938..1415870 (-)	933	WP_139543444.1	GDP-L-fucose synthase	-
D4I21_RS06970	gmd	1415863..1417008 (-)	1146	WP_139543445.1	GDP-mannose 4,6-dehydratase	-
D4I21_RS06975	-	1417039..1418451 (-)	1413	WP_139543446.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4I21_RS06980	comB10	1418522..1419658 (-)	1137	WP_139543447.1	DNA type IV secretion system protein ComB10	Machinery gene
D4I21_RS06985	comB9	1419651..1420631 (-)	981	WP_139543448.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4I21_RS06990	comB8	1420631..1421374 (-)	744	WP_001208388.1	virB8 family protein	Machinery gene
D4I21_RS06995	comB7	1421371..1421484 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4I21_RS07000	comB6	1421500..1422555 (-)	1056	WP_139543449.1	P-type conjugative transfer protein TrbL	Machinery gene
D4I21_RS07005	-	1422563..1423558 (-)	996	WP_139543450.1	PDZ domain-containing protein	-
D4I21_RS07010	-	1423558..1423859 (-)	302	Protein_1323	YbaB/EbfC family nucleoid-associated protein	-
D4I21_RS07015	panD	1423862..1424215 (-)	354	WP_139543451.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42157.62 Da
• Isoelectric Point: 9.8624

>NTDB_id=316296 D4I21_RS06980 WP_139543447.1 1418522..1419658(-) (comB10) [Helicobacter pylori strain 21-F-EK1]
MNKWLKGAIVFVGGFATITTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQSPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPIDLKTNTTPLKKDFSSKQWDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=316296 D4I21_RS06980 WP_139543447.1 1418522..1419658(-) (comB10) [Helicobacter pylori strain 21-F-EK1]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAGCCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTTAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTACTAACCCTCCCATAGATTTAAAAAC
AAATACAACCCCCCTAAAAAAAGACTTTTCTTCAAAGCAATGGGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGTATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCTTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAATAAAATGGGCGAATACCGCCTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTG
GGATCACTTCAGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.296	100	0.963