Detailed information NTG0316300

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4I21_RS07000
• Genome accession: NZ_CP032479
• Coordinates: 1421500..1422555 (-)
• Length: 351 a.a.
• NCBI ID: WP_139543449.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 21-F-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1416500..1427555

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4I21_RS06975	-	1417039..1418451 (-)	1413	WP_139543446.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4I21_RS06980	comB10	1418522..1419658 (-)	1137	WP_139543447.1	DNA type IV secretion system protein ComB10	Machinery gene
D4I21_RS06985	comB9	1419651..1420631 (-)	981	WP_139543448.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4I21_RS06990	comB8	1420631..1421374 (-)	744	WP_001208388.1	virB8 family protein	Machinery gene
D4I21_RS06995	comB7	1421371..1421484 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4I21_RS07000	comB6	1421500..1422555 (-)	1056	WP_139543449.1	P-type conjugative transfer protein TrbL	Machinery gene
D4I21_RS07005	-	1422563..1423558 (-)	996	WP_139543450.1	PDZ domain-containing protein	-
D4I21_RS07010	-	1423558..1423859 (-)	302	Protein_1323	YbaB/EbfC family nucleoid-associated protein	-
D4I21_RS07015	panD	1423862..1424215 (-)	354	WP_139543451.1	aspartate 1-decarboxylase	-
D4I21_RS07020	-	1424205..1426430 (-)	2226	WP_139543452.1	ATP-dependent Clp protease ATP-binding subunit	-
D4I21_RS07025	-	1426430..1426705 (-)	276	WP_139543591.1	ATP-dependent Clp protease adaptor ClpS	-
D4I21_RS07030	-	1426737..1427150 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39752.71 Da
• Isoelectric Point: 9.0413

>NTDB_id=316300 D4I21_RS07000 WP_139543449.1 1421500..1422555(-) (comB6) [Helicobacter pylori strain 21-F-EK1]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALTSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=316300 D4I21_RS07000 WP_139543449.1 1421500..1422555(-) (comB6) [Helicobacter pylori strain 21-F-EK1]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTAGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAGGAACAGAATTTCTTCAGCACCAGCGCGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTACGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTTTTG
TTTGCAATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGATTTAAGCCTTTTGTTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACTAATTTGAGCACCAACCTCAGCCAAAACGCCCTTACTTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96