Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D4L01_RS06060 Genome accession   NZ_CP032473
Coordinates   1234899..1235699 (-) Length   266 a.a.
NCBI ID   WP_139542285.1    Uniprot ID   -
Organism   Helicobacter pylori strain 476-A2-EK2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1229899..1240699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L01_RS06030 recJ 1230125..1231675 (+) 1551 WP_139542281.1 single-stranded-DNA-specific exonuclease RecJ -
  D4L01_RS06035 - 1231675..1232556 (+) 882 WP_139542282.1 RluA family pseudouridine synthase -
  D4L01_RS06040 - 1232667..1233227 (-) 561 WP_108314450.1 hypothetical protein -
  D4L01_RS06045 - 1233211..1233549 (-) 339 WP_033587625.1 hypothetical protein -
  D4L01_RS06050 - 1233677..1234372 (-) 696 WP_139542283.1 tetratricopeptide repeat protein -
  D4L01_RS06055 dprB 1234498..1234902 (-) 405 WP_139542284.1 Holliday junction resolvase RuvX Machinery gene
  D4L01_RS06060 dprA 1234899..1235699 (-) 801 WP_139542285.1 DNA-processing protein DprA Machinery gene
  D4L01_RS06065 minE 1235706..1235939 (-) 234 WP_000051425.1 cell division topological specificity factor MinE -
  D4L01_RS06070 minD 1235936..1236742 (-) 807 WP_001019104.1 septum site-determining protein MinD -
  D4L01_RS06075 ilvC 1236766..1237758 (-) 993 WP_139542286.1 ketol-acid reductoisomerase -
  D4L01_RS06085 - 1238007..1238789 (+) 783 WP_139542287.1 NAD+ synthase -
  D4L01_RS06090 - 1238786..1239724 (+) 939 WP_139542288.1 tetraacyldisaccharide 4'-kinase -
  D4L01_RS06095 pseH 1239657..1240199 (-) 543 WP_139542289.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29939.98 Da        Isoelectric Point: 9.1322

>NTDB_id=316171 D4L01_RS06060 WP_139542285.1 1234899..1235699(-) (dprA) [Helicobacter pylori strain 476-A2-EK2]
MKSNFQYSALENIPKVFDILKDPPKKLYCVGDIKLLRAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEETY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=316171 D4L01_RS06060 WP_139542285.1 1234899..1235699(-) (dprA) [Helicobacter pylori strain 476-A2-EK2]
ATGAAAAGTAATTTCCAATACAGCGCGCTAGAGAATATCCCTAAAGTCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATATAAAGCTTTTGAGAGCGCCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACCATCACTCTAGCTAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTTATCTATCCTACGAA
CAATCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCATTAAAG
GCTCTTTTTTAGCCAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTCATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGTAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTATTTGTTTTACCCCAGCGCTTAAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGCGCGAAAAACCCTAGCTATGAAGAGACGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTAGGTAAGATTAAGCGCATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.241

100

0.962
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.23

84.962

0.41

Multiple sequence alignment