Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4L01_RS06055 Genome accession   NZ_CP032473
Coordinates   1234498..1234902 (-) Length   134 a.a.
NCBI ID   WP_139542284.1    Uniprot ID   -
Organism   Helicobacter pylori strain 476-A2-EK2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1229498..1239902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L01_RS06030 recJ 1230125..1231675 (+) 1551 WP_139542281.1 single-stranded-DNA-specific exonuclease RecJ -
  D4L01_RS06035 - 1231675..1232556 (+) 882 WP_139542282.1 RluA family pseudouridine synthase -
  D4L01_RS06040 - 1232667..1233227 (-) 561 WP_108314450.1 hypothetical protein -
  D4L01_RS06045 - 1233211..1233549 (-) 339 WP_033587625.1 hypothetical protein -
  D4L01_RS06050 - 1233677..1234372 (-) 696 WP_139542283.1 tetratricopeptide repeat protein -
  D4L01_RS06055 dprB 1234498..1234902 (-) 405 WP_139542284.1 Holliday junction resolvase RuvX Machinery gene
  D4L01_RS06060 dprA 1234899..1235699 (-) 801 WP_139542285.1 DNA-processing protein DprA Machinery gene
  D4L01_RS06065 minE 1235706..1235939 (-) 234 WP_000051425.1 cell division topological specificity factor MinE -
  D4L01_RS06070 minD 1235936..1236742 (-) 807 WP_001019104.1 septum site-determining protein MinD -
  D4L01_RS06075 ilvC 1236766..1237758 (-) 993 WP_139542286.1 ketol-acid reductoisomerase -
  D4L01_RS06085 - 1238007..1238789 (+) 783 WP_139542287.1 NAD+ synthase -
  D4L01_RS06090 - 1238786..1239724 (+) 939 WP_139542288.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15240.75 Da        Isoelectric Point: 8.8566

>NTDB_id=316170 D4L01_RS06055 WP_139542284.1 1234498..1234902(-) (dprB) [Helicobacter pylori strain 476-A2-EK2]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=316170 D4L01_RS06055 WP_139542284.1 1234498..1234902(-) (dprB) [Helicobacter pylori strain 476-A2-EK2]
ATGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCACTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGACT
CGCTATCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGT
GCTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.727

98.507

0.963

Multiple sequence alignment