Detailed information NTG0316154

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4L53_RS07225
• Genome accession: NZ_CP032472
• Coordinates: 1479007..1480143 (-)
• Length: 378 a.a.
• NCBI ID: WP_139518911.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 479-A2-EK4
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1474007..1485143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4L53_RS07205	hypE	1474064..1475062 (+)	999	WP_139518907.1	hydrogenase expression/formation protein HypE	-
D4L53_RS07210	-	1475425..1476357 (-)	933	WP_139518908.1	GDP-L-fucose synthase	-
D4L53_RS07215	gmd	1476350..1477495 (-)	1146	WP_139518909.1	GDP-mannose 4,6-dehydratase	-
D4L53_RS07220	-	1477525..1478937 (-)	1413	WP_139518910.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4L53_RS07225	comB10	1479007..1480143 (-)	1137	WP_139518911.1	DNA type IV secretion system protein ComB10	Machinery gene
D4L53_RS07230	comB9	1480136..1481116 (-)	981	WP_139518912.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4L53_RS07235	comB8	1481116..1481859 (-)	744	WP_100959825.1	virB8 family protein	Machinery gene
D4L53_RS07240	comB7	1481856..1481969 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4L53_RS07245	comB6	1481985..1483040 (-)	1056	WP_139518913.1	P-type conjugative transfer protein TrbL	Machinery gene
D4L53_RS07250	-	1483048..1484043 (-)	996	WP_139519045.1	PDZ domain-containing protein	-
D4L53_RS07255	-	1484043..1484345 (-)	303	WP_139518914.1	YbaB/EbfC family nucleoid-associated protein	-
D4L53_RS07260	panD	1484357..1484707 (-)	351	WP_108310021.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42274.98 Da
• Isoelectric Point: 9.9835

>NTDB_id=316154 D4L53_RS07225 WP_139518911.1 1479007..1480143(-) (comB10) [Helicobacter pylori strain 479-A2-EK4]
MNKWLKGAIVFALGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQKPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFKSPPIDSKANTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=316154 D4L53_RS07225 WP_139518911.1 1479007..1480143(-) (comB10) [Helicobacter pylori strain 479-A2-EK4]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGCACTTGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAAACCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTCAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCCTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTAACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.032	100	0.96