Detailed information NTG0316158

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4L53_RS07245
• Genome accession: NZ_CP032472
• Coordinates: 1481985..1483040 (-)
• Length: 351 a.a.
• NCBI ID: WP_139518913.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 479-A2-EK4
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1476985..1488040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4L53_RS07220	-	1477525..1478937 (-)	1413	WP_139518910.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4L53_RS07225	comB10	1479007..1480143 (-)	1137	WP_139518911.1	DNA type IV secretion system protein ComB10	Machinery gene
D4L53_RS07230	comB9	1480136..1481116 (-)	981	WP_139518912.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4L53_RS07235	comB8	1481116..1481859 (-)	744	WP_100959825.1	virB8 family protein	Machinery gene
D4L53_RS07240	comB7	1481856..1481969 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4L53_RS07245	comB6	1481985..1483040 (-)	1056	WP_139518913.1	P-type conjugative transfer protein TrbL	Machinery gene
D4L53_RS07250	-	1483048..1484043 (-)	996	WP_139519045.1	PDZ domain-containing protein	-
D4L53_RS07255	-	1484043..1484345 (-)	303	WP_139518914.1	YbaB/EbfC family nucleoid-associated protein	-
D4L53_RS07260	panD	1484357..1484707 (-)	351	WP_108310021.1	aspartate 1-decarboxylase	-
D4L53_RS07265	-	1484697..1486922 (-)	2226	WP_139518915.1	ATP-dependent Clp protease ATP-binding subunit	-
D4L53_RS07270	-	1486922..1487197 (-)	276	WP_139518916.1	ATP-dependent Clp protease adaptor ClpS	-
D4L53_RS07275	-	1487212..1487625 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39674.62 Da
• Isoelectric Point: 9.0413

>NTDB_id=316158 D4L53_RS07245 WP_139518913.1 1481985..1483040(-) (comB6) [Helicobacter pylori strain 479-A2-EK4]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQSFFSASTLLEALLFVGFFVLFNY
ALKNPSRFYELFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYTLSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFVIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=316158 D4L53_RS07245 WP_139518913.1 1481985..1483040(-) (comB6) [Helicobacter pylori strain 479-A2-EK4]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAGTTTTTTCAGCGCTAGTACGCTTTTAGAGGCGTTATTATTTGTGGGGTTTTTTGTGCTGTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATACCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTTTTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTGTCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACT
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	94.872	100	0.949