Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   D4L53_RS07235 Genome accession   NZ_CP032472
Coordinates   1481116..1481859 (-) Length   247 a.a.
NCBI ID   WP_100959825.1    Uniprot ID   -
Organism   Helicobacter pylori strain 479-A2-EK4     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1476116..1486859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L53_RS07215 gmd 1476350..1477495 (-) 1146 WP_139518909.1 GDP-mannose 4,6-dehydratase -
  D4L53_RS07220 - 1477525..1478937 (-) 1413 WP_139518910.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4L53_RS07225 comB10 1479007..1480143 (-) 1137 WP_139518911.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4L53_RS07230 comB9 1480136..1481116 (-) 981 WP_139518912.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4L53_RS07235 comB8 1481116..1481859 (-) 744 WP_100959825.1 virB8 family protein Machinery gene
  D4L53_RS07240 comB7 1481856..1481969 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4L53_RS07245 comB6 1481985..1483040 (-) 1056 WP_139518913.1 P-type conjugative transfer protein TrbL Machinery gene
  D4L53_RS07250 - 1483048..1484043 (-) 996 WP_139519045.1 PDZ domain-containing protein -
  D4L53_RS07255 - 1484043..1484345 (-) 303 WP_139518914.1 YbaB/EbfC family nucleoid-associated protein -
  D4L53_RS07260 panD 1484357..1484707 (-) 351 WP_108310021.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28738.95 Da        Isoelectric Point: 8.9604

>NTDB_id=316156 D4L53_RS07235 WP_100959825.1 1481116..1481859(-) (comB8) [Helicobacter pylori strain 479-A2-EK4]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=316156 D4L53_RS07235 WP_100959825.1 1481116..1481859(-) (comB8) [Helicobacter pylori strain 479-A2-EK4]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTCAGATTGGAGAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATCTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATCTAT
GTGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCCATTGCAGCTAAACTAACGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTATTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGTTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

98.785

100

0.988

Multiple sequence alignment