Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   KAN01_RS04805 Genome accession   NZ_CP038816
Coordinates   997186..999207 (+) Length   673 a.a.
NCBI ID   WP_004707569.1    Uniprot ID   A0AA36K9Y9
Organism   Acinetobacter nosocomialis strain KAN01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 992186..1004207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN01_RS04780 (KAN01_04780) - 992519..992929 (+) 411 WP_031953066.1 GFA family protein -
  KAN01_RS04785 (KAN01_04785) - 992981..994216 (-) 1236 WP_032012250.1 pyridoxal phosphate-dependent aminotransferase -
  KAN01_RS04790 (KAN01_04790) - 994425..994604 (+) 180 WP_000139633.1 hypothetical protein -
  KAN01_RS04795 (KAN01_04795) - 994635..996070 (-) 1436 Protein_914 diguanylate cyclase domain-containing protein -
  KAN01_RS04800 (KAN01_04800) - 996215..997006 (-) 792 WP_002052788.1 hypothetical protein -
  KAN01_RS04805 (KAN01_04805) uvrB 997186..999207 (+) 2022 WP_004707569.1 excinuclease ABC subunit UvrB Machinery gene
  KAN01_RS04810 (KAN01_04810) - 999302..999889 (+) 588 WP_002052730.1 lipocalin family protein -
  KAN01_RS04815 (KAN01_04815) rarD 999998..1000945 (+) 948 WP_135924596.1 EamA family transporter RarD -
  KAN01_RS04820 (KAN01_04820) - 1001162..1002619 (+) 1458 WP_002052743.1 glyceraldehyde-3-phosphate dehydrogenase -
  KAN01_RS04825 (KAN01_04825) - 1002769..1003503 (+) 735 WP_032012245.1 hypothetical protein -
  KAN01_RS04830 (KAN01_04830) - 1003515..1004189 (+) 675 WP_002052875.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77234.01 Da        Isoelectric Point: 5.3351

>NTDB_id=316084 KAN01_RS04805 WP_004707569.1 997186..999207(+) (uvrB) [Acinetobacter nosocomialis strain KAN01]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGVEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAK
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADRITD
SMQKAIDETERRRAKQIEFNELHGITPRSAVRQAVKEIDTGEVLSDDQIDEKILEQAQALSADDRHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=316084 KAN01_RS04805 WP_004707569.1 997186..999207(+) (uvrB) [Acinetobacter nosocomialis strain KAN01]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
AAATGGCGTCGAAAAAGGTTTTCGTAATCAGTTACTTTTGGGCGTGACTGGTTCCGGTAAGACCTATACCATGGCAAACG
TGATTGCCCAAACACAGCGACCAACCATTGTGATGGCGCACAATAAGACATTAGCAGCCCAGCTTTATGGTGAATTTAAA
GCCTTCTTCCCAAATAATGCAGTTGAATACTTCGTAAGTTATTACGACTACTATCAACCCGAGGCTTATGTTCCGTCTTC
AGATACATTTATTGAAAAAGATGCAGCAATTAATGACCATATTGACCAGATGCGTTTATCTGCAACACGTGCCTTGTTAG
AGCGTCGTGATGCAATTATTGTAGCTTCTGTTTCTGCTATTTATGGTTTGGGTGACCCAAATGCCTATATGCAAATGTTA
TTGCATGTGGTTCAGGGTGACCGAGTGAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACCCGTAATGA
GCTTGAATTTTTACGTGGTACTTATCGAATTCGTGGCGAAATTATTGATATCTTCCCGGCAGAATCTGACCAACACGCAA
TTCGTATTGAACTTTTTGATGATGAAGTAGATTCAATTCGTTGGTTTGATCCACTCACCGGTAAGATGGTGCGCAAAGTA
CCACGTGTTACGATTTATCCGAAAAGTCATTATGTAACGCCAAAAGACAACTTAACGCGTGCTATTGATACCATTAAGGA
TGAACTTCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTGCTTGAGGCTCAGCGTATCGAACAGCGTACTCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGTTATACCAATGGTATTGAAAACTACTCTCGTCATTTATCAGGCCGTCCAGCA
GGTGAAGCACCACCGACATTATTTGATTATGTACCGGACGATGCTTTACTTATTATTGATGAGTCACATGTAACGGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCACGTAAAGAAAACTTGGTGAATTATGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGCCCAATGAAATTTGAAGAGTGGGAACGTATTGTTCCGACCACTATTTTTGTGAGTGCAACGCCAGCCAAA
TACGAGTTGGAGAAGTCAGAACAAGTGGTTGAGCAGGTCGTTCGTCCTACAGGTTTGATTGATCCTGAAATTGAAGTTCG
CCCAGTACTTACTCAAGTCGATGATGTTCTTTCTGAAATTAATATTCGTAAGAACTTAAATGAACGTGTATTGGTGACGA
CTTTAACAAAACGTATGGCGGAAGATTTAACATCTTATTTAAAAGAATATGGTGTTAAGGTCGCTTATTTGCACTCGGAT
ATTGATACGGTTGAACGTGTCAAAATTATTCATGAGTTACGTACAGGCGTATTTGATGTTTTGGTCGGTATTAACTTACT
TCGTGAAGGCTTAGATATGCCAGAGGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAGGGCTTCTTACGTTCAGAAC
GTTCACTTATTCAGACCATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAGGCAATTTTATATGCAGATAGAATTACCGAC
TCTATGCAAAAAGCAATTGATGAGACAGAACGCCGTAGAGCTAAACAAATCGAGTTTAACGAGCTGCATGGTATTACACC
ACGTAGTGCAGTCCGTCAGGCCGTGAAAGAAATTGATACGGGTGAAGTGCTTTCAGATGATCAAATTGATGAGAAAATAT
TGGAGCAGGCACAAGCACTAAGTGCTGATGACCGTCATATTCTTTCTGACCCTAAATTGTTCAGTAAGCATATTACTAAG
CTTGAGAAAGAAATGTTAAAGGCGTCTAAAGATCTACAATTTGAGCAAGCGGCTCGTATTCGTGATGAAATCGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(161-251)

UvrB/uvrC motif (UVR)

(638-670)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Type III restriction enzyme, res subunit (ResIII)

(17-89)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K9Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.698

99.406

0.574
  uvrB Streptococcus pneumoniae R6

57.698

99.406

0.574
  uvrB Streptococcus pneumoniae D39

57.698

99.406

0.574