Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   D5S12_RS08020 Genome accession   NZ_CP032459
Coordinates   1753787..1756003 (+) Length   738 a.a.
NCBI ID   WP_187598777.1    Uniprot ID   -
Organism   Pseudomonas syringae strain CAS02     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1748787..1761003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5S12_RS08005 (D5S12_08490) - 1751127..1751744 (+) 618 WP_188056934.1 glutathione S-transferase -
  D5S12_RS08010 (D5S12_08495) - 1751933..1752865 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  D5S12_RS08015 (D5S12_08500) - 1752862..1753650 (+) 789 WP_096105609.1 ABC transporter permease -
  D5S12_RS08020 (D5S12_08505) comA 1753787..1756003 (+) 2217 WP_187598777.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D5S12_RS08025 (D5S12_08510) exbB 1756085..1756762 (+) 678 WP_003430973.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  D5S12_RS08030 (D5S12_08515) - 1756759..1757190 (+) 432 WP_128774799.1 ExbD/TolR family protein -
  D5S12_RS08035 (D5S12_08520) lpxK 1757190..1758185 (+) 996 WP_058416599.1 tetraacyldisaccharide 4'-kinase -
  D5S12_RS08040 (D5S12_08525) - 1758203..1758388 (+) 186 WP_002552679.1 Trm112 family protein -
  D5S12_RS08045 (D5S12_08530) kdsB 1758385..1759149 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  D5S12_RS08050 (D5S12_08535) murB 1759184..1760203 (+) 1020 WP_003430975.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80272.50 Da        Isoelectric Point: 10.4734

>NTDB_id=316028 D5S12_RS08020 WP_187598777.1 1753787..1756003(+) (comA) [Pseudomonas syringae strain CAS02]
MRTGMIALALGLLALRFLPALPPTWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALSDRLAPRLDGQTLWVQG
KVVGLPSVAEGVVRFELEGATSRRARLPARIRVAWYGGQPVSSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRFLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNTVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWRWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQWLFVFLDAVAAALPAWLPSAVPIWAWWLSLLGALLLLLPKGIPVRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRTHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVSRVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPNGNPASCILSVDAGGERLLLAGDIDVNAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=316028 D5S12_RS08020 WP_187598777.1 1753787..1756003(+) (comA) [Pseudomonas syringae strain CAS02]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCGTTGCCGCCAACCTGGCTATT
GCTGTTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTCCGTACCTATCCACTGGCGTTGTTCCTGCTCGGTTTCACTT
GGGCCTGCGTGTCGGCGCAGTGGGCGTTGAGTGACCGGTTGGCGCCGCGTCTCGATGGTCAGACGCTGTGGGTGCAGGGC
AAGGTGGTCGGTTTACCGAGTGTCGCCGAAGGCGTGGTGCGTTTCGAGCTGGAAGGTGCCACGTCACGACGCGCCAGGCT
GCCCGCGCGAATCAGGGTGGCCTGGTACGGCGGCCAGCCGGTGAGCAGCGGCGAGCGCTGGCGTATGGCGGTCAAACTCA
AGCGACCGGCCGGGCTGGTCAATCCGGATGCTTTCGACTATGAAGCCTGGCTGCTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTAGTGGATGGTCAGCTATTGGCACCCGCGCGTGCCGCCTGGCGCGATGCCATTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAGGGTGGTCTGGCAGCGCTGGTGCTGGGCGATGGCTCAGGGCTATCGAGCACCGACTGGCAGGTGT
TGCAGGATACCGGCACTGTGCATCTGCTGGTCATTTCCGGTCAGCACATCGGGTTGCTGGCCGGGGTGATTTACGCCTTG
GTCGCAGGCCTGGCGCGCTGGGGGCTGTGGCCGCGCTTTTTGCCCTGGCTGCCGTGGGCGTGTGCACTGGCGTTCAGCGC
TGCACTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTCCGGCGCGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGCCATCTGGGCGTGGTCTGGCCCTTGTTGCTGTCCTTCAACACGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCAGCGGTCGGCATTCTGATCCTGATTTTCAGCGGACGTCTCGGCGC
CTGGCGCTGGTGGCAAAGCTGGACACGGGCGCAATGGCTGATCGCCGTCGGCTTGTTGCCGATCCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGTGGGCCGTTTGCCAACTTGCTTGCCGTCCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGAACGCTGTTGCTGCCGGTCCCTGTGGTCGGGGAAGGTCTGCTGTGGCTGGCGGGCGGGGCGTTGCAGTGGCTGTT
CGTGTTCCTCGACGCGGTGGCTGCCGCATTGCCGGCCTGGTTGCCCAGTGCGGTGCCAATCTGGGCATGGTGGTTGAGCC
TGCTCGGGGCCTTGCTCTTGTTGCTGCCCAAGGGCATACCCGTGCGGCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCACTCGAATCAGTGCCTGAAGGCCAGGTAGACGTGTTGCAACTGGATGTGGGGCAAGGCCTGGCGATTCTCCT
GCGCACCCGCACCCACACACTCCTGTATGACGCAGGTCCACGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCAGGTGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGAGGTGCG
GCGGCGGTTCATCAGGCCTTTCCGGTGAGCCGGGTGCTGGGTGGCGAGCTGGCCAGACTCGCGCCGCAACTCGATGCCCG
ATTGTGCGAGAGCGGTGCACGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTAATGGCA
ATCCAGCCTCCTGCATCCTCAGCGTCGACGCCGGGGGCGAGCGTCTGCTGCTGGCCGGCGATATCGATGTGAACGCCGAG
CGCGCGGCAATCGACAGCGGGTTCGACCTTCGTGCTCACTGGTTGCAGTCGCCACATCACGGCAGCCGAACCTCGTCGTC
CAAAGCGTTTCTGCGCGCCGTGGCACCGGTAGGCGTGCTGATTTCCCGTGGTCGCAACAACGCGTTCGGTCACCCGCATC
CGTTGGTCATGGCGCGCTATCGAGGCCTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCGGTCCGCCTGCAACTG
GGGACGTTCGGAACGCCACAGGCCGAGCGCGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.011

97.019

0.602
  comA Ralstonia pseudosolanacearum GMI1000

35.231

100

0.402

Multiple sequence alignment