Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   D5S12_RS08025 Genome accession   NZ_CP032459
Coordinates   1756085..1756762 (+) Length   225 a.a.
NCBI ID   WP_003430973.1    Uniprot ID   A0A193SLD5
Organism   Pseudomonas syringae strain CAS02     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1751085..1761762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5S12_RS08005 (D5S12_08490) - 1751127..1751744 (+) 618 WP_188056934.1 glutathione S-transferase -
  D5S12_RS08010 (D5S12_08495) - 1751933..1752865 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  D5S12_RS08015 (D5S12_08500) - 1752862..1753650 (+) 789 WP_096105609.1 ABC transporter permease -
  D5S12_RS08020 (D5S12_08505) comA 1753787..1756003 (+) 2217 WP_187598777.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D5S12_RS08025 (D5S12_08510) exbB 1756085..1756762 (+) 678 WP_003430973.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  D5S12_RS08030 (D5S12_08515) - 1756759..1757190 (+) 432 WP_128774799.1 ExbD/TolR family protein -
  D5S12_RS08035 (D5S12_08520) lpxK 1757190..1758185 (+) 996 WP_058416599.1 tetraacyldisaccharide 4'-kinase -
  D5S12_RS08040 (D5S12_08525) - 1758203..1758388 (+) 186 WP_002552679.1 Trm112 family protein -
  D5S12_RS08045 (D5S12_08530) kdsB 1758385..1759149 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  D5S12_RS08050 (D5S12_08535) murB 1759184..1760203 (+) 1020 WP_003430975.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24242.55 Da        Isoelectric Point: 8.5280

>NTDB_id=316029 D5S12_RS08025 WP_003430973.1 1756085..1756762(+) (exbB) [Pseudomonas syringae strain CAS02]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDSEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=316029 D5S12_RS08025 WP_003430973.1 1756085..1756762(+) (exbB) [Pseudomonas syringae strain CAS02]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCAT
CGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCACCGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTGGACAGCGAAAAGCTCAAGCAGCTGCGCGCGGACTCGCCGCTGGGTGAAATCCTGGCCGCAGGTCTGGCCAAT
TCCAGGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCTGCGCGGGTCATTCATGAGCTGGAGCGCTACCT
CAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTGGTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCG
GCTCGTTCAACAGCTCCGGGGCCACCGCCAACGCCGGCGTGCTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCG
TCGGGTCTTATCGTCGCGATCCCGGCAATCTTCTTTCATCGCTTTCTGCAGAGCCGCGTCGATGAGTTGGTGGTCGGCAT
GGAGCAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAGATCGACCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A193SLD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment