Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   D5S10_RS03665 Genome accession   NZ_CP032456
Coordinates   845050..846387 (-) Length   445 a.a.
NCBI ID   WP_016982716.1    Uniprot ID   A0A0P9PT90
Organism   Pseudomonas savastanoi strain CAS03     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 840050..851387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5S10_RS03655 (D5S10_04005) - 841950..843059 (-) 1110 WP_005777802.1 efflux RND transporter periplasmic adaptor subunit -
  D5S10_RS03660 (D5S10_04010) - 843141..843758 (-) 618 WP_005777803.1 TetR/AcrR family transcriptional regulator -
  D5S10_RS03665 (D5S10_04035) pilR 845050..846387 (-) 1338 WP_016982716.1 sigma-54 dependent transcriptional regulator Regulator
  D5S10_RS03670 (D5S10_04040) pilS 846390..847982 (-) 1593 WP_005777807.1 PAS domain-containing sensor histidine kinase Regulator
  D5S10_RS03675 (D5S10_04045) - 847972..848211 (-) 240 WP_002551997.1 PP0621 family protein -
  D5S10_RS03680 (D5S10_04050) - 848341..849363 (-) 1023 WP_005733851.1 outer membrane protein assembly factor BamD -
  D5S10_RS03685 (D5S10_04055) rluD 849513..850475 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D5S10_RS03690 (D5S10_04060) pgeF 850472..851200 (+) 729 WP_016981940.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49771.86 Da        Isoelectric Point: 6.6378

>NTDB_id=315987 D5S10_RS03665 WP_016982716.1 845050..846387(-) (pilR) [Pseudomonas savastanoi strain CAS03]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPCAQPARSIDSRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGSQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGTQPVARLNAQALDTLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQEHSGPSLADIDNLED
YLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=315987 D5S10_RS03665 WP_016982716.1 845050..846387(-) (pilR) [Pseudomonas savastanoi strain CAS03]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGACGAGCCGGATATCCGCGAACTGCTGGAGATCACTCTGGGGCGCAT
GAAACTCGACACCCGATGCGCCCGCAATGTTGCCGAGGCCCACGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAACGGCCTTGAGCTGGTGCAGCATATTCAGCACGGCTACCCCCATGTGCCAGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATTAATGCGCTCAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
TGACCTCGGCAGGCTGCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCTTGCGCCCAGCCAGCCCGCAGCATCGACAGCC
GCCTGCTGGGCGACTCGCTGGCGATGCGTACCTTGCGCAACCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAGCTTGTAGCGCGGCTCATCCACGAGCAGGGTCCGCGCATCGATAAACCGTT
CATACCGGTGAATTGCGGGGCCATTCCTTCCGAGCTGATGGAGAGTGAATTCTTTGGCCATCGCAAGGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCTGGTCTGTTTCAGGCGGCACATACCGGGACGCTGTTTCTCGACGAGGTGGCCGACCTACCG
CTGGCCATGCAGGTAAAGCTGTTGCGAGCCATCCAGGAAAAATCCATCCGCAGCGTAGGCAGCCAGCAAGAACAGATTGT
GGACGTACGCATTCTGTGCGCCACGCACAAGAACCTTAATGCAGAGGTTGCGGCAGGCCGTTTCCGTCAGGATCTGTATT
ACCGGTTGAACGTGATCGAAGTGCGCGTCCCCTCATTGCGCGAACGGCGCGAGGACATCGATCAACTGGCAGCCAGTGTT
CTAAAGCGACTTGCTGGCAATGGCACGCAACCGGTGGCGCGCCTGAATGCGCAGGCGCTGGACACGCTGAAGAGCTACCG
ATTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTCTGTGAAAACGATGAAATCCACGCCA
GCGATCTGCGCCTGGCAGAGTCCGCCAGCCCCCAGGAGCACAGCGGTCCTAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCATCGAGCGCAAGCTCATTCTGCAGGCCCTGGAAGAAACCCGCTGGAACCGTACCGCAGCGGCAGAAAG
GCTCAGCTTGTCCTTCAGATCGCTGCGTTACCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.703

99.775

0.775
  pilR Acinetobacter baumannii strain A118

48.491

100

0.506
  luxO Vibrio cholerae strain A1552

37.162

99.775

0.371

Multiple sequence alignment