Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   TFGB2_RS02690 Genome accession   NZ_CP032429
Coordinates   451197..451808 (+) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TFG-B2     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446197..456808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TFGB2_RS02660 (TFGB2_00451) - 446514..447095 (-) 582 WP_047918049.1 superoxide dismutase -
  TFGB2_RS02670 (TFGB2_00452) dnaB 447258..448664 (+) 1407 WP_003690896.1 replicative DNA helicase -
  TFGB2_RS02675 (TFGB2_00453) pilH 448972..449637 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  TFGB2_RS02680 (TFGB2_00454) pilV 449669..450277 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  TFGB2_RS02685 (TFGB2_00455) pilJ 450274..451218 (+) 945 WP_047916984.1 PilW family protein Machinery gene
  TFGB2_RS02690 (TFGB2_00456) pilK 451197..451808 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  TFGB2_RS02695 (TFGB2_00457) pilL 451810..452283 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  TFGB2_RS02700 (TFGB2_00458) - 452353..452661 (-) 309 WP_010951048.1 AzlD family protein -
  TFGB2_RS02705 - 452658..453365 (-) 708 Protein_456 AzlC family ABC transporter permease -
  TFGB2_RS02710 (TFGB2_00460) dut 453531..453983 (+) 453 WP_047918679.1 dUTP diphosphatase -
  TFGB2_RS02715 (TFGB2_00461) dapC 454059..455246 (+) 1188 WP_047918680.1 succinyldiaminopimelate transaminase -
  TFGB2_RS02720 (TFGB2_00462) yaaA 455557..456336 (+) 780 WP_047918681.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=315768 TFGB2_RS02690 WP_003687918.1 451197..451808(+) (pilK) [Neisseria gonorrhoeae strain TFG-B2]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=315768 TFGB2_RS02690 WP_003687918.1 451197..451808(+) (pilK) [Neisseria gonorrhoeae strain TFG-B2]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment