Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E5M00_RS04555 Genome accession   NZ_CP038791
Coordinates   921036..921512 (-) Length   158 a.a.
NCBI ID   WP_001186727.1    Uniprot ID   -
Organism   Escherichia coli strain PF9285     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 916036..926512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5M00_RS04520 (E5M00_04520) kpsS 917642..918862 (+) 1221 WP_000794251.1 capsular biosynthesis protein Regulator
  E5M00_RS04525 (E5M00_04525) - 918888..919118 (-) 231 Protein_872 hypothetical protein -
  E5M00_RS04530 (E5M00_04530) - 919224..919400 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  E5M00_RS04535 (E5M00_04535) - 919417..919784 (-) 368 Protein_874 DUF5983 family protein -
  E5M00_RS04540 (E5M00_04540) cbtA 919844..920221 (-) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  E5M00_RS04545 (E5M00_04545) cbeA 920310..920678 (-) 369 WP_001285590.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  E5M00_RS04550 (E5M00_04550) - 920752..920973 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  E5M00_RS04555 (E5M00_04555) radC 921036..921512 (-) 477 WP_001186727.1 RadC family protein Machinery gene
  E5M00_RS04560 (E5M00_04560) - 921528..922013 (-) 486 WP_000849570.1 antirestriction protein -
  E5M00_RS04565 (E5M00_04565) - 922068..922886 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  E5M00_RS04575 (E5M00_04575) - 922986..923219 (-) 234 WP_001119729.1 DUF905 family protein -
  E5M00_RS04580 (E5M00_04580) - 923298..923753 (-) 456 WP_000581504.1 IrmA family protein -
  E5M00_RS04585 (E5M00_04585) - 923829..925962 (-) 2134 Protein_883 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.30 Da        Isoelectric Point: 7.2020

>NTDB_id=315766 E5M00_RS04555 WP_001186727.1 921036..921512(-) (radC) [Escherichia coli strain PF9285]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=315766 E5M00_RS04555 WP_001186727.1 921036..921512(-) (radC) [Escherichia coli strain PF9285]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment