Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   E5M00_RS04520 Genome accession   NZ_CP038791
Coordinates   917642..918862 (+) Length   406 a.a.
NCBI ID   WP_000794251.1    Uniprot ID   -
Organism   Escherichia coli strain PF9285     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 912642..923862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5M00_RS04505 (E5M00_04505) rfbA 912786..913664 (+) 879 WP_001556223.1 glucose-1-phosphate thymidylyltransferase RfbA -
  E5M00_RS04510 (E5M00_04510) rfbC 913731..914282 (+) 552 WP_021526989.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  E5M00_RS04515 (E5M00_04515) - 914332..916479 (+) 2148 WP_000281770.1 capsular polysaccharide biosynthesis protein -
  E5M00_RS04520 (E5M00_04520) kpsS 917642..918862 (+) 1221 WP_000794251.1 capsular biosynthesis protein Regulator
  E5M00_RS04525 (E5M00_04525) - 918888..919118 (-) 231 Protein_872 hypothetical protein -
  E5M00_RS04530 (E5M00_04530) - 919224..919400 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  E5M00_RS04535 (E5M00_04535) - 919417..919784 (-) 368 Protein_874 DUF5983 family protein -
  E5M00_RS04540 (E5M00_04540) cbtA 919844..920221 (-) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  E5M00_RS04545 (E5M00_04545) cbeA 920310..920678 (-) 369 WP_001285590.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  E5M00_RS04550 (E5M00_04550) - 920752..920973 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  E5M00_RS04555 (E5M00_04555) radC 921036..921512 (-) 477 WP_001186727.1 RadC family protein Machinery gene
  E5M00_RS04560 (E5M00_04560) - 921528..922013 (-) 486 WP_000849570.1 antirestriction protein -
  E5M00_RS04565 (E5M00_04565) - 922068..922886 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  E5M00_RS04575 (E5M00_04575) - 922986..923219 (-) 234 WP_001119729.1 DUF905 family protein -
  E5M00_RS04580 (E5M00_04580) - 923298..923753 (-) 456 WP_000581504.1 IrmA family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48437.92 Da        Isoelectric Point: 10.1710

>NTDB_id=315765 E5M00_RS04520 WP_000794251.1 917642..918862(+) (kpsS) [Escherichia coli strain PF9285]
MKNNALSILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=315765 E5M00_RS04520 WP_000794251.1 917642..918862(+) (kpsS) [Escherichia coli strain PF9285]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTCTTCAA
TGATGTTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGGGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGACGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ATGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382

Multiple sequence alignment