Detailed information NTG0315712

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: D3880_RS18970
• Genome accession: NZ_CP032419
• Coordinates: 4168147..4169487 (+)
• Length: 446 a.a.
• NCBI ID: WP_119894971.1
• Uniprot ID: -
• Organism: Pseudomonas cavernae strain K2W31S-8
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4163147..4174487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D3880_RS18945 (D3880_18950)	-	4163445..4164461 (+)	1017	WP_119894967.1	outer membrane protein assembly factor BamD	-
D3880_RS18950 (D3880_18955)	-	4164529..4166160 (-)	1632	WP_119894968.1	NAD+ synthase	-
D3880_RS18960 (D3880_18965)	-	4166331..4166561 (+)	231	WP_119895786.1	PP0621 family protein	-
D3880_RS18965 (D3880_18970)	pilS	4166551..4168143 (+)	1593	WP_218567583.1	sensor histidine kinase	Regulator
D3880_RS18970 (D3880_18975)	pilR	4168147..4169487 (+)	1341	WP_119894971.1	sigma-54-dependent transcriptional regulator	Regulator
D3880_RS18975 (D3880_18980)	thiO	4169600..4170691 (-)	1092	WP_119894972.1	glycine oxidase ThiO	-
D3880_RS18980 (D3880_18985)	-	4170754..4171170 (-)	417	WP_119894973.1	type IV pilin protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50200.68 Da
• Isoelectric Point: 5.8218

>NTDB_id=315712 D3880_RS18970 WP_119894971.1 4168147..4169487(+) (pilR) [Pseudomonas cavernae strain K2W31S-8]
MANRQRALIVDDEPDIRELLEITLGRMRLDTRSARNVKEAREWLTREPFDLCLTDMRLPDGSGLELVQHIQQRHPQVPVA
MITAYGNLDTAINALKAGAFDFLTKPVDLTRLRELVATALRLRTPQEEELPVDSRLLGDSPPMRALRKQILKLARSQAPV
YISGESGSGKELVARLIHEQGPRSELPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQVANGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRTVGGQQEQVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLADV
MLKRLAESSGLPAAQLNPDALEKLKSYRFPGNVRELENMLERAYTLCDDEQIQTHDLRLAESSGLAEAGEASLAQIDNLE
DYLENLERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide

• Length: 1341 bp

>NTDB_id=315712 D3880_RS18970 WP_119894971.1 4168147..4169487(+) (pilR) [Pseudomonas cavernae strain K2W31S-8]
ATGGCCAACCGACAACGCGCCCTGATCGTCGATGACGAGCCCGATATCCGCGAATTGCTGGAAATCACCCTCGGCCGCAT
GCGCCTCGACACGCGCAGCGCGCGCAACGTCAAGGAAGCCCGCGAGTGGCTGACGCGCGAACCCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAGCGGCCTGGAGCTGGTGCAGCACATCCAGCAGCGCCATCCCCAGGTGCCGGTGGCG
ATGATCACCGCCTATGGCAACCTCGACACCGCGATCAACGCGCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAGCCGGT
CGACCTCACCCGCCTGCGCGAACTGGTGGCTACCGCCCTGCGCCTGCGCACCCCGCAAGAAGAGGAGCTGCCGGTGGACA
GCCGCCTGCTCGGCGACTCGCCGCCCATGCGCGCGCTGCGCAAGCAGATCCTCAAGCTCGCCCGCAGCCAGGCGCCGGTG
TATATCAGCGGCGAATCGGGCAGTGGCAAGGAACTGGTGGCGCGCCTGATCCACGAGCAAGGTCCGCGCAGCGAGCTGCC
ATTCGTCCCGGTGAACTGTGGCGCCATCCCGTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCA
CCGGCGCCATCGAGGACAAGCAGGGGCTGTTCCAGGTCGCCAACGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTG
CCGCTGCCGATGCAGGTCAAACTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCACGGTCGGCGGCCAGCAGGAGCAGGT
GGTGGACGTGCGCATCCTCTGCGCCACCCACAAGGATCTGGCCGCCGAGGTCGCCGCCGGCCGCTTCCGCCAGGACCTCT
ACTACCGCCTCAACGTCATCGAGCTGCGGGTGCCGCCGCTGCGCGAACGCCGCGAAGACATCGGCCTGCTCGCCGACGTG
ATGCTCAAGCGCCTGGCCGAAAGCAGCGGCCTGCCCGCCGCCCAACTCAACCCCGATGCGCTGGAGAAACTGAAGAGCTA
TCGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATGCTCGAACGCGCCTACACCCTGTGCGACGATGAGCAGATCCAGA
CCCACGACCTGCGCCTGGCCGAGTCATCCGGATTAGCGGAAGCTGGCGAGGCCAGCCTGGCACAGATAGACAACCTCGAG
GACTACCTGGAAAACCTCGAACGCAAATTGATCATGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACCGCCGCAGCCCA
GCGCCTGGGCCTGACCTTCCGCTCGATGCGTTATCGGCTGAAGAAGCTGGGGATCGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	87.387	99.552	0.87
pilR	Acinetobacter baumannii strain A118	50.644	100	0.529