Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   D3880_RS18965 Genome accession   NZ_CP032419
Coordinates   4166551..4168143 (+) Length   530 a.a.
NCBI ID   WP_218567583.1    Uniprot ID   -
Organism   Pseudomonas cavernae strain K2W31S-8     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4161551..4173143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3880_RS18935 (D3880_18940) pgeF 4161589..4162311 (-) 723 WP_119895785.1 peptidoglycan editing factor PgeF -
  D3880_RS18940 (D3880_18945) rluD 4162322..4163296 (-) 975 WP_119894966.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D3880_RS18945 (D3880_18950) - 4163445..4164461 (+) 1017 WP_119894967.1 outer membrane protein assembly factor BamD -
  D3880_RS18950 (D3880_18955) - 4164529..4166160 (-) 1632 WP_119894968.1 NAD+ synthase -
  D3880_RS18960 (D3880_18965) - 4166331..4166561 (+) 231 WP_119895786.1 PP0621 family protein -
  D3880_RS18965 (D3880_18970) pilS 4166551..4168143 (+) 1593 WP_218567583.1 sensor histidine kinase Regulator
  D3880_RS18970 (D3880_18975) pilR 4168147..4169487 (+) 1341 WP_119894971.1 sigma-54-dependent transcriptional regulator Regulator
  D3880_RS18975 (D3880_18980) thiO 4169600..4170691 (-) 1092 WP_119894972.1 glycine oxidase ThiO -
  D3880_RS18980 (D3880_18985) - 4170754..4171170 (-) 417 WP_119894973.1 type IV pilin protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58602.84 Da        Isoelectric Point: 8.2541

>NTDB_id=315711 D3880_RS18965 WP_218567583.1 4166551..4168143(+) (pilS) [Pseudomonas cavernae strain K2W31S-8]
MIAEPLLLSSAQGQRILRLYNLYRLIIGLALVLLISSELDDQLLELVNAPLFRYGSWLYLIINVLVAALLQRPQHLLPVF
SLALVDVLLLACLFYAGGGTPSGIGNLLIVAVAIANILLRGRIGLLIAAVAAIGLIYLTFYLSLSRPAAATQYVQAGALG
ALCFAAALFVQGLSRRLQHSESLAEQRAADVANLEALNEQILQRMRTGILVLDSQHRVLLANQGAQTLLGRDALAGKILD
PHCPELVKRLQQWCHNPTLRPSSLQTQPHGPALQPSFVPLQRGTQQHTLVFLDDISQIAQQAQQLKLVALGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDQSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFAGEFRNTLPHT
QQLHVETGGGTLQTRMDPNQLTQVLTNLVQNGLRYSAQRNPYGQVWLKLFRDADSDLPVLEVLDDGPGVPAEQVQHIFEP
FYTTENKGTGLGLYISRELCESNQARLDYKPREGGGSCLRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=315711 D3880_RS18965 WP_218567583.1 4166551..4168143(+) (pilS) [Pseudomonas cavernae strain K2W31S-8]
GTGATCGCTGAACCCCTGCTGCTGAGCAGCGCGCAGGGACAGCGAATTCTGCGGCTGTACAACCTCTACCGGCTGATCAT
CGGCCTAGCCCTGGTGCTGTTGATCTCCAGCGAGCTGGACGACCAACTGCTGGAACTGGTCAACGCGCCGCTGTTTCGCT
ACGGCAGCTGGCTGTACCTAATCATCAATGTGCTGGTCGCCGCCCTGCTGCAGCGCCCACAACACCTGCTCCCGGTGTTC
AGTCTGGCGCTAGTCGACGTCTTGCTGCTGGCCTGCCTGTTCTATGCCGGCGGCGGCACCCCCAGCGGTATCGGCAACCT
GCTGATCGTCGCGGTGGCCATCGCCAACATCCTCCTGCGCGGGCGCATTGGCCTGCTGATCGCCGCGGTGGCGGCCATCG
GCCTGATCTACCTGACCTTCTACCTCAGCCTCAGCCGCCCGGCCGCCGCCACCCAATACGTCCAGGCCGGCGCGCTCGGC
GCGCTGTGCTTCGCCGCCGCGCTGTTCGTCCAGGGCCTGTCGCGACGCCTGCAACACAGCGAAAGCCTGGCCGAACAGCG
CGCCGCCGATGTCGCCAATCTCGAGGCGCTGAACGAGCAGATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTGGACA
GCCAGCATCGCGTGCTGCTGGCCAACCAGGGCGCGCAAACCCTGCTCGGCCGCGACGCGTTGGCCGGCAAGATTCTCGAC
CCGCATTGCCCGGAGCTGGTCAAGCGTCTGCAACAGTGGTGCCACAACCCCACCCTGCGCCCGTCCAGCCTGCAGACGCA
GCCTCACGGCCCGGCCCTGCAACCCAGCTTCGTGCCGCTGCAGCGTGGCACGCAGCAACACACCCTGGTGTTTCTCGATG
ACATCTCGCAGATCGCCCAGCAGGCCCAGCAACTGAAACTGGTCGCCCTCGGCCGCCTCACCGCCGGCATCGCCCATGAG
ATCCGCAACCCGCTGGGTGCCATCAGCCATGCCGCGCAGCTCTTGCAGGAGTCGGAAGACCTGCAGGGCCCGGACCAGCG
CCTAGCGCAGATCATCCAGGACCAGTCGCGGCGCATGAACCTGGTGATCGAGAACGTCCTGCAACTGTCGCGCCGGCGCC
AGGCGGAGCCGCAATTGCTCGACCTGAAGTACTGGCTGCACCGCTTCGCCGGCGAGTTCCGCAACACCCTGCCGCACACC
CAGCAGCTGCATGTGGAAACCGGCGGCGGTACCCTGCAGACACGCATGGACCCCAACCAGCTGACCCAGGTGCTGACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGCCCAGCGCAACCCCTATGGCCAGGTCTGGCTCAAACTGTTCCGTGACGCCG
ACAGCGACCTGCCGGTGCTGGAGGTGCTGGACGACGGCCCCGGGGTGCCGGCCGAGCAGGTGCAGCATATCTTCGAGCCG
TTCTACACCACGGAAAACAAAGGCACCGGCCTCGGCCTGTATATTTCCCGGGAGCTGTGCGAGAGCAACCAGGCCCGCCT
CGATTACAAACCGCGCGAGGGTGGCGGCAGCTGCTTGCGCATCACCTTCGCCCACCCACGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

68.868

100

0.689

Multiple sequence alignment