Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   D3880_RS14110 Genome accession   NZ_CP032419
Coordinates   3097350..3097985 (-) Length   211 a.a.
NCBI ID   WP_119894075.1    Uniprot ID   A0A385Z4F9
Organism   Pseudomonas cavernae strain K2W31S-8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3092350..3102985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3880_RS14080 (D3880_14085) murB 3093466..3094485 (-) 1020 WP_119894069.1 UDP-N-acetylmuramate dehydrogenase -
  D3880_RS14085 (D3880_14090) - 3094482..3094946 (-) 465 WP_119894070.1 low molecular weight protein-tyrosine-phosphatase -
  D3880_RS14090 (D3880_14095) kdsB 3094946..3095710 (-) 765 WP_119894071.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  D3880_RS14095 (D3880_14100) - 3095707..3095892 (-) 186 WP_119894072.1 Trm112 family protein -
  D3880_RS14100 (D3880_14105) lpxK 3095909..3096913 (-) 1005 WP_119894073.1 tetraacyldisaccharide 4'-kinase -
  D3880_RS14105 (D3880_14110) - 3096913..3097353 (-) 441 WP_119894074.1 ExbD/TolR family protein -
  D3880_RS14110 (D3880_14115) exbB 3097350..3097985 (-) 636 WP_119894075.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  D3880_RS14115 (D3880_14120) comA 3098057..3100282 (-) 2226 WP_119894076.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D3880_RS14120 (D3880_14125) - 3100425..3100985 (+) 561 WP_119894077.1 DUF2062 domain-containing protein -
  D3880_RS14125 (D3880_14130) - 3101025..3102269 (-) 1245 WP_119894078.1 lipoprotein-releasing ABC transporter permease subunit -
  D3880_RS14130 (D3880_14135) lolD 3102269..3102952 (-) 684 WP_119894079.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22852.25 Da        Isoelectric Point: 8.5290

>NTDB_id=315705 D3880_RS14110 WP_119894075.1 3097350..3097985(-) (exbB) [Pseudomonas cavernae strain K2W31S-8]
MWELVKAGGWMMLPIILCSIAAMGIIVERLWTLRANRVSPPQLLGQVWLLIKNKQLNAQKLKEIRASSPLGEVLAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIDIFTGFMGTGTANAPMLAGGIGKALVTTAA
GLIVAIPAVFFHRFLLRRVDELVVAMEQEAIKLVEVVQGNREVDFAEVPKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=315705 D3880_RS14110 WP_119894075.1 3097350..3097985(-) (exbB) [Pseudomonas cavernae strain K2W31S-8]
GTGTGGGAACTGGTAAAAGCGGGTGGCTGGATGATGCTGCCGATCATTCTCTGTTCTATCGCCGCCATGGGCATCATCGT
CGAAAGACTATGGACCTTGCGCGCCAACCGGGTTTCGCCGCCGCAATTGCTCGGTCAGGTCTGGTTGTTGATCAAGAACA
AGCAGCTGAATGCGCAGAAACTCAAGGAAATTCGTGCCTCCTCGCCGCTCGGTGAAGTGCTGGCGGCCGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCGGCCAGCCGTGTCATCCACGAGCTCGAGCGCTACCT
CAACGCCCTCGGCACCATCGCTGCCATGGCGCCGCTGCTCGGTCTGCTCGGCACGGTGTTCGGCATGATCGATATTTTCA
CCGGCTTCATGGGTACCGGCACGGCTAATGCGCCAATGCTCGCCGGCGGGATCGGCAAGGCCCTGGTGACCACCGCGGCC
GGCCTGATCGTGGCGATTCCGGCCGTGTTCTTCCACCGCTTCCTGCTGCGCCGAGTCGACGAACTGGTGGTGGCCATGGA
ACAGGAGGCGATCAAGCTGGTGGAAGTGGTGCAGGGTAATCGCGAAGTCGATTTCGCTGAGGTGCCCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385Z4F9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.126

98.104

0.806

Multiple sequence alignment