Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   SaO268_RS04190 Genome accession   NZ_CP038612
Coordinates   824005..825990 (+) Length   661 a.a.
NCBI ID   WP_000229251.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O268     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 819005..830990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO268_RS04160 - 820053..820151 (+) 99 Protein_786 hypothetical protein -
  SaO268_RS04165 (SaO268_0767) prfB 820321..821431 (+) 1111 WP_010956549.1 peptide chain release factor 2 -
  SaO268_RS04170 - 821585..821692 (+) 108 WP_078061094.1 hypothetical protein -
  SaO268_RS04175 (SaO268_0768) - 821840..822679 (+) 840 WP_000749387.1 CHAP domain-containing protein -
  SaO268_RS04180 (SaO268_0769) - 822853..823503 (+) 651 WP_000538141.1 YfbR-like 5'-deoxynucleotidase -
  SaO268_RS04185 (SaO268_0770) - 823500..823736 (+) 237 WP_000638419.1 CsbA family protein -
  SaO268_RS04190 (SaO268_0771) uvrB 824005..825990 (+) 1986 WP_000229251.1 excinuclease ABC subunit UvrB Machinery gene
  SaO268_RS04195 (SaO268_0772) uvrA 825998..828844 (+) 2847 WP_000662671.1 excinuclease ABC subunit UvrA Machinery gene
  SaO268_RS04200 (SaO268_0773) hprK 829440..830372 (+) 933 WP_000958224.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76662.36 Da        Isoelectric Point: 5.0538

>NTDB_id=315541 SaO268_RS04190 WP_000229251.1 824005..825990(+) (uvrB) [Staphylococcus aureus strain O268]
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFK
EFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLV
VSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKER
EHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPL
GSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGP
YEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSE
IKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTD
SMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAK
DLDFEKATELRDMLFELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=315541 SaO268_RS04190 WP_000229251.1 824005..825990(+) (uvrB) [Staphylococcus aureus strain O268]
ATGGTTGAACATTATCCTTTTAAAATACATTCTGATTTTGAGCCTCAAGGTGACCAACCGCAAGCAATTAAGGAAATCGT
GGAAGGTATTAAAGCGGGGAAAAGACATCAAACTTTATTAGGTGCAACTGGCACAGGTAAAACATTTACGATGAGTAATG
TTATTAAAGAAGTTGGGAAACCAACGTTAATTATCGCGCATAACAAAACATTAGCAGGACAATTATATAGTGAGTTTAAA
GAATTTTTTCCTGAAAACAGGGTGGAATACTTTGTAAGTTACTATGATTATTATCAACCTGAGGCATACGTACCGTCTAC
TGACACTTTTATTGAAAAAGATGCCTCAATCAATGATGAAATTGATCAACTACGACATTCTGCTACAAGTGCGTTATTTG
AACGCGATGATGTAATTATTATTGCTAGTGTAAGTTGTATATATGGTTTAGGTAATCCTGAAGAATATAAAGATTTAGTA
GTAAGTGTTCGAGTTGGTATGGAAATGGATAGAAGCGAATTACTTAGAAAACTTGTAGATGTGCAATATACACGTAATGA
CATCGATTTCCAACGAGGAACGTTTCGAGTGCGTGGTGATGTAGTTGAAATATTCCCAGCCTCTAAAGAAGAACTTTGTA
TAAGGGTTGAGTTTTTCGGCGATGAGATTGACCGTATTCGAGAAGTTAACTACCTAACAGGTGAAGTGTTGAAAGAAAGA
GAACATTTTGCGATATTCCCAGCTTCTCACTTCGTAACACGTGAAGAAAAGTTGAAAGTTGCGATTGAACGTATTGAAAA
AGAATTGGAAGAACGATTGAAAGAATTACGAGATGAGAATAAATTACTAGAAGCGCAAAGGTTAGAACAGCGTACCAACT
ATGATTTAGAAATGATGCGAGAAATGGGGTTCTGTTCAGGAATTGAAAACTATTCAGTACATTTAACGTTGCGACCACTA
GGTTCGACACCATATACTTTATTGGATTACTTTGGCGATGATTGGTTAATAATGATTGATGAATCACATGTGACGTTACC
GCAAGTTCGTGGCATGTATAATGGAGACAGAGCACGAAAACAAGTTTTAGTTGATCATGGATTTAGATTACCAAGTGCGT
TAGATAACCGCCCACTTAAATTTGAAGAATTTGAAGAAAAGACTAAACAACTTGTGTATGTATCTGCAACGCCTGGTCCA
TACGAAATTGAACATACGGATAAGATGGTTGAACAAATTATTCGTCCTACTGGTTTACTGGACCCTAAGATTGAGGTTAG
ACCTACTGAAAATCAAATTGACGATTTATTAAGTGAAATTCAAACAAGGGTTGAGCGTAATGAAAGAGTACTTGTTACAA
CGCTCACTAAAAAGATGAGTGAAGATTTAACCACATATATGAAAGAAGCAGGCATTAAAGTTAACTATCTACATTCTGAA
ATTAAAACATTAGAACGAATCGAAATAATTAGAGACTTACGAATGGGTACATATGATGTTATCGTAGGTATTAATTTATT
AAGAGAGGGTATTGATATACCAGAAGTTTCTCTAGTTGTCATATTAGATGCAGATAAAGAAGGATTTTTACGTTCTAACC
GCTCATTAATTCAAACAATAGGTAGAGCTGCGCGTAACGATAAAGGTGAAGTCATTATGTATGCCGATAAAATGACTGAT
TCGATGAAGTATGCAATTGATGAGACACAACGTCGTCGAGAAATACAGATGAAACATAATGAAAAACATGGTATTACACC
TAAAACAATTAATAAAAAAATACATGATTTAATTAGTGCTACTGTTGAAAATGACGAAAATAATGACAAAGCACAAACTG
TGATACCTAAGAAGATGACGAAAAAAGAACGTCAAAAGACAATCGACAATATAGAAAAAGAAATGAAACAAGCAGCGAAA
GATTTAGATTTCGAGAAAGCTACAGAATTAAGAGATATGTTATTTGAATTAAAAGCAGAAGGGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(434-546)

Type III restriction enzyme, res subunit (ResIII)

(14-140)

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB/uvrC motif (UVR)

(626-659)

UvrB interaction domain (UvrB_inter)

(161-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

67.688

98.79

0.669
  uvrB Streptococcus pneumoniae D39

67.688

98.79

0.669
  uvrB Streptococcus pneumoniae TIGR4

67.688

98.79

0.669