Detailed information NTG0315455

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: D5R90_RS06490
• Genome accession: NZ_CP032400
• Coordinates: 1304647..1305096 (+)
• Length: 149 a.a.
• NCBI ID: WP_119773875.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain YM011
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1299647..1310096

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D5R90_RS06460 (D5R90_06460)	-	1301373..1301738 (+)	366	WP_003098799.1	DUF1033 family protein	-
D5R90_RS06465 (D5R90_06465)	comYA	1301799..1302740 (+)	942	WP_003098801.1	competence type IV pilus ATPase ComGA	Machinery gene
D5R90_RS06470 (D5R90_06470)	comYB	1302691..1303707 (+)	1017	WP_003098804.1	competence type IV pilus assembly protein ComGB	Machinery gene
D5R90_RS06475 (D5R90_06475)	comGC/cglC	1303708..1304034 (+)	327	WP_003098806.1	competence type IV pilus major pilin ComGC	Machinery gene
D5R90_RS10340 (D5R90_06480)	comGD	1303994..1304422 (+)	429	WP_003098807.1	competence type IV pilus minor pilin ComGD	-
D5R90_RS06485 (D5R90_06485)	comGE	1304394..1304687 (+)	294	WP_031239176.1	competence type IV pilus minor pilin ComGE	-
D5R90_RS06490 (D5R90_06490)	comYF	1304647..1305096 (+)	450	WP_119773875.1	competence type IV pilus minor pilin ComGF	Machinery gene
D5R90_RS06495 (D5R90_06495)	comGG	1305086..1305439 (+)	354	WP_003098812.1	competence type IV pilus minor pilin ComGG	-
D5R90_RS06500 (D5R90_06500)	comYH	1305501..1306457 (+)	957	WP_003098815.1	class I SAM-dependent methyltransferase	Machinery gene
D5R90_RS06505 (D5R90_06505)	-	1306514..1307710 (+)	1197	WP_003098816.1	acetate kinase	-
D5R90_RS06510 (D5R90_06510)	-	1307833..1308036 (+)	204	WP_003098819.1	helix-turn-helix transcriptional regulator	-
D5R90_RS06515 (D5R90_06515)	-	1308049..1308501 (+)	453	WP_003098820.1	hypothetical protein	-
D5R90_RS06520 (D5R90_06520)	-	1308511..1309167 (+)	657	WP_003098822.1	CPBP family intramembrane glutamic endopeptidase	-
D5R90_RS06525 (D5R90_06525)	proC	1309201..1309971 (-)	771	WP_003098824.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 149 a.a.
• Molecular weight: 16976.98 Da
• Isoelectric Point: 10.2834

>NTDB_id=315455 D5R90_RS06490 WP_119773875.1 1304647..1305096(+) (comYF) [Streptococcus iniae strain YM011]
MKSIKKSLALRKISLKAFTLLECMLALVILSGAILVYQGMTKSLFFNMSYLVENDQDKWLLFSQQLRAELTGARFEKVEN
NKLYVAKEGKQIAFGLSKQGDFRKTAANGHGYHPMLLDLKDAKISHHNKEITVSITWKSGLERVFLYAF

Nucleotide

• Length: 450 bp

>NTDB_id=315455 D5R90_RS06490 WP_119773875.1 1304647..1305096(+) (comYF) [Streptococcus iniae strain YM011]
GTGAAAAGCATCAAAAAGTCTTTAGCCTTAAGAAAAATTAGCCTCAAGGCATTTACGCTTTTAGAGTGTATGTTGGCCTT
AGTGATATTGTCAGGTGCCATCTTAGTTTATCAAGGAATGACAAAATCTTTATTTTTTAACATGTCTTATTTGGTTGAAA
ATGATCAGGACAAGTGGTTGTTGTTTTCACAACAGTTGAGAGCTGAGTTAACAGGAGCTCGGTTTGAGAAGGTCGAAAAT
AATAAACTTTACGTAGCAAAAGAAGGAAAGCAGATAGCTTTTGGACTTTCAAAACAAGGAGATTTTCGAAAAACAGCAGC
AAATGGTCATGGTTATCATCCCATGCTTCTGGATCTTAAAGATGCTAAGATTAGTCATCATAATAAGGAGATTACAGTAA
GTATCACTTGGAAAAGTGGGCTAGAAAGAGTCTTTCTTTATGCTTTTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (53-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	52.174	92.617	0.483
comYF	Streptococcus mutans UA159	51.449	92.617	0.477
comGF/cglF	Streptococcus pneumoniae D39	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae Rx1	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae R6	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae TIGR4	46.617	89.262	0.416
comGF/cglF	Streptococcus mitis NCTC 12261	45.865	89.262	0.409
comGF	Lactococcus lactis subsp. cremoris KW2	43.478	92.617	0.403
comGF/cglF	Streptococcus mitis SK321	44.361	89.262	0.396