Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   TFGA2_RS02645 Genome accession   NZ_CP032398
Coordinates   451942..452415 (+) Length   157 a.a.
NCBI ID   WP_025455870.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TFG-A2     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446942..457415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TFGA2_RS02620 (TFGA2_00453) dnaB 447390..448796 (+) 1407 WP_134797838.1 replicative DNA helicase -
  TFGA2_RS02625 (TFGA2_00454) pilH 449104..449769 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  TFGA2_RS02630 (TFGA2_00455) pilV 449801..450409 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  TFGA2_RS02635 (TFGA2_00456) pilJ 450406..451350 (+) 945 WP_047916984.1 PilW family protein Machinery gene
  TFGA2_RS02640 (TFGA2_00457) pilK 451329..451940 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  TFGA2_RS02645 (TFGA2_00458) pilL 451942..452415 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  TFGA2_RS02650 (TFGA2_00459) - 452485..452793 (-) 309 WP_010951048.1 AzlD family protein -
  TFGA2_RS02655 - 452790..453497 (-) 708 Protein_457 AzlC family ABC transporter permease -
  TFGA2_RS02660 (TFGA2_00461) dut 453663..454115 (+) 453 WP_047918679.1 dUTP diphosphatase -
  TFGA2_RS02665 (TFGA2_00462) dapC 454191..455378 (+) 1188 WP_047918680.1 succinyldiaminopimelate transaminase -
  TFGA2_RS02670 (TFGA2_00463) yaaA 455689..456468 (+) 780 WP_047918681.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17555.36 Da        Isoelectric Point: 9.4067

>NTDB_id=315384 TFGA2_RS02645 WP_025455870.1 451942..452415(+) (pilL) [Neisseria gonorrhoeae strain TFG-A2]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAQVYLETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=315384 TFGA2_RS02645 WP_025455870.1 451942..452415(+) (pilL) [Neisseria gonorrhoeae strain TFG-A2]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGTCTATTTGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

100

100

1
  pilX Neisseria meningitidis 8013

85.987

100

0.86

Multiple sequence alignment