Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E4664_RS07530 Genome accession   NZ_CP038500
Coordinates   1540231..1540827 (-) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter baumannii strain CIAT758     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1535231..1545827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4664_RS07495 (E4664_07495) - 1535316..1536167 (-) 852 WP_001271636.1 AAA family ATPase -
  E4664_RS07500 (E4664_07500) - 1536197..1536583 (-) 387 WP_001206390.1 hypothetical protein -
  E4664_RS07505 (E4664_07505) - 1536576..1536836 (-) 261 WP_188146221.1 YcgL domain-containing protein -
  E4664_RS07510 (E4664_07510) - 1537324..1537488 (+) 165 WP_000086294.1 hypothetical protein -
  E4664_RS07515 (E4664_07515) - 1537560..1537903 (-) 344 Protein_1484 hypothetical protein -
  E4664_RS07520 (E4664_07520) - 1538034..1538300 (-) 267 WP_005120048.1 hypothetical protein -
  E4664_RS07525 (E4664_07525) - 1538803..1539927 (-) 1125 WP_000486120.1 ribonuclease D -
  E4664_RS07530 (E4664_07530) recR 1540231..1540827 (-) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  E4664_RS07535 (E4664_07535) - 1540837..1541166 (-) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  E4664_RS07540 (E4664_07540) - 1541432..1541668 (-) 237 WP_000917295.1 hypothetical protein -
  E4664_RS07545 (E4664_07545) - 1541846..1543033 (-) 1188 WP_001076394.1 O-succinylhomoserine sulfhydrylase -
  E4664_RS07550 (E4664_07550) - 1543167..1544252 (+) 1086 WP_000825836.1 alpha/beta fold hydrolase -
  E4664_RS07555 (E4664_07555) - 1544333..1545100 (-) 768 WP_049592505.1 class I SAM-dependent methyltransferase -
  E4664_RS07560 (E4664_07560) - 1545275..1545649 (-) 375 WP_002036642.1 cell envelope integrity protein TolA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=315380 E4664_RS07530 WP_000490551.1 1540231..1540827(-) (recR) [Acinetobacter baumannii strain CIAT758]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=315380 E4664_RS07530 WP_000490551.1 1540231..1540827(-) (recR) [Acinetobacter baumannii strain CIAT758]
GTGTTTAGTGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCCCAACGTAT
GGCTTTACATCTTTTGATGAAAAATCGTGAAGGTGCATTTGCTTTAGCACATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACAGAGCATGAAATTTGTGATATTTGCGCTTCAACAGAAAGAGATGATCAATTG
CTTTGTGTAGTTGAGTCTCCGGCAGATGTTATGGCAATCGAGCAAAGTGGTAGTTTTCGTGGCAAATACCATGTGTTGGG
TGGACACCTTTCTCCATTAGATGGAATCGGTCCAGAAGAAATAGGCATTCCTTATCTAATCCAACGTTTAAGCCAAGGTA
CGATCGAAGAAGTCATTTTGGCAACTAATGCTACTGTGGAAGGTCAGGCGACAGCGCATTATTTGGTTGAAGCGACGAAG
CATTTACCTATTCACATGACACGTATTGCTCAAGGCGTGCCACAAGGTGGTGAGCTTGAATATGTGGATAGTCATACCTT
AAGTCAGGCTGTTCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424

Multiple sequence alignment