Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   NMO_RS04195 Genome accession   NC_013016
Coordinates   813283..814248 (+) Length   321 a.a.
NCBI ID   WP_015815451.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha14     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 808283..819248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS04175 (NMO_0761) - 809503..810090 (-) 588 WP_015815447.1 superoxide dismutase -
  NMO_RS04180 (NMO_0762) dnaB 810253..811659 (+) 1407 WP_015815448.1 replicative DNA helicase -
  NMO_RS04185 (NMO_0763) pilH 811968..812636 (+) 669 WP_048816076.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMO_RS04190 (NMO_0764) pilV 812666..813286 (+) 621 WP_015815450.1 type IV pilus modification protein PilV Regulator
  NMO_RS04195 (NMO_0765) pilJ 813283..814248 (+) 966 WP_015815451.1 PilW family protein Machinery gene
  NMO_RS04200 (NMO_0766) pilK 814227..814826 (+) 600 WP_015815452.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NMO_RS04205 (NMO_0767) pilX 814831..815304 (+) 474 WP_002255852.1 PilX family type IV pilin Machinery gene
  NMO_RS04210 (NMO_0768) - 817007..817375 (-) 369 Protein_803 AzlC family ABC transporter permease -
  NMO_RS04215 (NMO_0769) dut 817575..818027 (+) 453 WP_015815455.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 35218.06 Da        Isoelectric Point: 8.9554

>NTDB_id=31532 NMO_RS04195 WP_015815451.1 813283..814248(+) (pilJ) [Neisseria meningitidis alpha14]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKNVVSDVAQKNRLFSLKGSSANKLIPNGTDNKLIPITESLDIGYQGFTQRLNALVFQYGIDDLDASAETVV
VSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQRYVVNAYAVGRIAGEEGLFRFQLDDKGKWGNPQLLVKKINK
MDIRYIYVSDCPEDDDAGKEEKFKYTGTFDSSTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRT
L

Nucleotide


Download         Length: 966 bp        

>NTDB_id=31532 NMO_RS04195 WP_015815451.1 813283..814248(+) (pilJ) [Neisseria meningitidis alpha14]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACGTCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGAATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAGG
GAGCAGTGCAAATAAACTTATCCCCAACGGTACAGATAATAAACTTATCCCCATAACGGAATCTTTAGATATCGGATATC
AGGGTTTTACCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCTGAGACTGTTGTA
GTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTAC
TAATGATGATAAACAAAATGGAAATATCACCCGTCAAAGGTATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTG
AGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAA
ATGGATATACGGTATATTTATGTTTCCGATTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAAAATTCAAATATACGGG
TACATTCGACAGCTCCACAAATGCTGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTG
CCGCTTCTTCAGACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACA
CTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

77.329

100

0.776

Multiple sequence alignment