Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NMO_RS04185 Genome accession   NC_013016
Coordinates   811968..812636 (+) Length   222 a.a.
NCBI ID   WP_048816076.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha14     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 806968..817636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS04175 (NMO_0761) - 809503..810090 (-) 588 WP_015815447.1 superoxide dismutase -
  NMO_RS04180 (NMO_0762) dnaB 810253..811659 (+) 1407 WP_015815448.1 replicative DNA helicase -
  NMO_RS04185 (NMO_0763) pilH 811968..812636 (+) 669 WP_048816076.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMO_RS04190 (NMO_0764) pilV 812666..813286 (+) 621 WP_015815450.1 type IV pilus modification protein PilV Regulator
  NMO_RS04195 (NMO_0765) pilJ 813283..814248 (+) 966 WP_015815451.1 PilW family protein Machinery gene
  NMO_RS04200 (NMO_0766) pilK 814227..814826 (+) 600 WP_015815452.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NMO_RS04205 (NMO_0767) pilX 814831..815304 (+) 474 WP_002255852.1 PilX family type IV pilin Machinery gene
  NMO_RS04210 (NMO_0768) - 817007..817375 (-) 369 Protein_803 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24908.56 Da        Isoelectric Point: 10.0112

>NTDB_id=31530 NMO_RS04185 WP_048816076.1 811968..812636(+) (pilH) [Neisseria meningitidis alpha14]
MCTRKQQGFTLTELLIVMAIAAIMAMIALPNMSQWIASRRIASHAERVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NKCDFGKKGQGMLAFGDKNGNKIYDNDTADVLLRSVVLNDDINNKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYTK
DQHLTSKSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=31530 NMO_RS04185 WP_048816076.1 811968..812636(+) (pilH) [Neisseria meningitidis alpha14]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAAATGTGACTTCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGATATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATAATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.425

99.55

0.86

Multiple sequence alignment