Detailed information NTG0315134

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: D3X12_RS32230
• Genome accession: NZ_CP032358
• Coordinates: 7051008..7052342 (+)
• Length: 444 a.a.
• NCBI ID: WP_011063538.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain pf5
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 7046008..7057342

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D3X12_RS32210 (D3X12_32185)	pgeF	7047364..7048089 (-)	726	WP_011063534.1	peptidoglycan editing factor PgeF	-
D3X12_RS32215 (D3X12_32190)	rluD	7048086..7049048 (-)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
D3X12_RS32220 (D3X12_32195)	-	7049199..7050224 (+)	1026	WP_011063536.1	outer membrane protein assembly factor BamD	-
D3X12_RS32225 (D3X12_32200)	-	7050349..7050582 (+)	234	WP_011063537.1	PP0621 family protein	-
D3X12_RS32230 (D3X12_32205)	pilR	7051008..7052342 (+)	1335	WP_011063538.1	sigma-54 dependent transcriptional regulator	Regulator
D3X12_RS32235 (D3X12_32210)	thiO	7052339..7053439 (-)	1101	WP_011063539.1	glycine oxidase ThiO	-
D3X12_RS32240 (D3X12_32215)	-	7053493..7053894 (-)	402	WP_011063540.1	type IV pilin protein	-
D3X12_RS32245 (D3X12_32220)	-	7053910..7056972 (-)	3063	WP_011063541.1	pilus assembly protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49274.55 Da
• Isoelectric Point: 8.6800

>NTDB_id=315134 D3X12_RS32230 WP_011063538.1 7051008..7052342(+) (pilR) [Pseudomonas protegens strain pf5]
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKLATDCATDDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPINCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=315134 D3X12_RS32230 WP_011063538.1 7051008..7052342(+) (pilR) [Pseudomonas protegens strain pf5]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCTCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCTGGCCACGGACTGCGCAACGGATGACCCTGCCCGGC
AATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAGCGGGTCGCCCGCCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGATCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTGGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAAACCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGTTGCGAGTCCCGGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGACAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGACCTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.205	99.775	0.631
pilR	Acinetobacter baumannii strain A118	45.752	100	0.473
luxO	Vibrio cholerae strain A1552	37.558	97.748	0.367