Detailed information NTG0315057

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: D4N38_RS19660
• Genome accession: NZ_CP032352
• Coordinates: 4207554..4208888 (-)
• Length: 444 a.a.
• NCBI ID: WP_011063538.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain pf5-k3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4202554..4213888

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4N38_RS19645 (D4N38_19595)	-	4202924..4205986 (+)	3063	WP_011063541.1	pilus assembly protein	-
D4N38_RS19650 (D4N38_19600)	-	4206002..4206403 (+)	402	WP_011063540.1	type IV pilin protein	-
D4N38_RS19655 (D4N38_19605)	thiO	4206457..4207557 (+)	1101	WP_011063539.1	glycine oxidase ThiO	-
D4N38_RS19660 (D4N38_19610)	pilR	4207554..4208888 (-)	1335	WP_011063538.1	sigma-54 dependent transcriptional regulator	Regulator
D4N38_RS19665 (D4N38_19615)	-	4209314..4209547 (-)	234	WP_011063537.1	PP0621 family protein	-
D4N38_RS19670 (D4N38_19620)	-	4209672..4210697 (-)	1026	WP_011063536.1	outer membrane protein assembly factor BamD	-
D4N38_RS19675 (D4N38_19625)	rluD	4210848..4211810 (+)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
D4N38_RS19680 (D4N38_19630)	pgeF	4211807..4212532 (+)	726	WP_011063534.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49274.55 Da
• Isoelectric Point: 8.6800

>NTDB_id=315057 D4N38_RS19660 WP_011063538.1 4207554..4208888(-) (pilR) [Pseudomonas protegens strain pf5-k3]
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKLATDCATDDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPINCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=315057 D4N38_RS19660 WP_011063538.1 4207554..4208888(-) (pilR) [Pseudomonas protegens strain pf5-k3]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCTCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCTGGCCACGGACTGCGCAACGGATGACCCTGCCCGGC
AATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAGCGGGTCGCCCGCCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGATCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTGGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAAACCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGTTGCGAGTCCCGGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGACAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGACCTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.205	99.775	0.631
pilR	Acinetobacter baumannii strain A118	45.752	100	0.473
luxO	Vibrio cholerae strain A1552	37.558	97.748	0.367