Detailed information NTG0314974

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: D3Z18_RS02525
• Genome accession: NZ_CP032316
• Coordinates: 463038..464450 (+)
• Length: 470 a.a.
• NCBI ID: WP_038401758.1
• Uniprot ID: -
• Organism: Campylobacter jejuni subsp. jejuni strain HPC5
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 458038..469450

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D3Z18_RS02510 (D3Z18_02510)	-	458431..459072 (+)	642	WP_002855494.1	HAD family hydrolase	-
D3Z18_RS02515 (D3Z18_02515)	nifJ	459165..462725 (+)	3561	WP_002851382.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
D3Z18_RS02520 (D3Z18_02520)	ctsR	462749..463060 (+)	312	WP_002855438.1	hypothetical protein	Machinery gene
D3Z18_RS02525 (D3Z18_02525)	ctsD	463038..464450 (+)	1413	WP_038401758.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
D3Z18_RS02530 (D3Z18_02530)	ctsP	464443..465051 (+)	609	WP_002851464.1	ATP-binding protein	Machinery gene
D3Z18_RS02535 (D3Z18_02535)	ctsX	465055..465642 (+)	588	WP_002851370.1	membrane protein	Machinery gene
D3Z18_RS02540 (D3Z18_02540)	ctsE	465632..467194 (+)	1563	Protein_478	GspE/PulE family protein	-
D3Z18_RS02545 (D3Z18_02545)	-	467191..468189 (+)	999	Protein_479	type II secretion system F family protein	-
D3Z18_RS10255 (D3Z18_02550)	-	468284..468982 (-)	699	Protein_480	hypothetical protein	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 53120.73 Da
• Isoelectric Point: 6.6184

>NTDB_id=314974 D3Z18_RS02525 WP_038401758.1 463038..464450(+) (ctsD) [Campylobacter jejuni subsp. jejuni strain HPC5]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKIPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSLNAPSLKDLGFKHYE

Nucleotide

• Length: 1413 bp

>NTDB_id=314974 D3Z18_RS02525 WP_038401758.1 463038..464450(+) (ctsD) [Campylobacter jejuni subsp. jejuni strain HPC5]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAATTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTTTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	99.574	100	0.996