Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   D3Z18_RS02520 Genome accession   NZ_CP032316
Coordinates   462749..463060 (+) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni subsp. jejuni strain HPC5     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 457749..468060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z18_RS02510 (D3Z18_02510) - 458431..459072 (+) 642 WP_002855494.1 HAD family hydrolase -
  D3Z18_RS02515 (D3Z18_02515) nifJ 459165..462725 (+) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  D3Z18_RS02520 (D3Z18_02520) ctsR 462749..463060 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  D3Z18_RS02525 (D3Z18_02525) ctsD 463038..464450 (+) 1413 WP_038401758.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  D3Z18_RS02530 (D3Z18_02530) ctsP 464443..465051 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  D3Z18_RS02535 (D3Z18_02535) ctsX 465055..465642 (+) 588 WP_002851370.1 membrane protein Machinery gene
  D3Z18_RS02540 (D3Z18_02540) ctsE 465632..467194 (+) 1563 Protein_478 GspE/PulE family protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=314973 D3Z18_RS02520 WP_002855438.1 462749..463060(+) (ctsR) [Campylobacter jejuni subsp. jejuni strain HPC5]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=314973 D3Z18_RS02520 WP_002855438.1 462749..463060(+) (ctsR) [Campylobacter jejuni subsp. jejuni strain HPC5]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment