Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   D3Z90_RS07640 Genome accession   NZ_CP032311
Coordinates   1633107..1635329 (+) Length   740 a.a.
NCBI ID   WP_136475167.1    Uniprot ID   -
Organism   Pseudomonas sp. DG56-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1628107..1640329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z90_RS07620 - 1629984..1630607 (+) 624 WP_136475163.1 glutathione S-transferase family protein -
  D3Z90_RS07625 - 1630746..1631678 (+) 933 WP_136475164.1 ABC transporter ATP-binding protein -
  D3Z90_RS07630 - 1631675..1632454 (+) 780 WP_136475165.1 ABC transporter permease -
  D3Z90_RS07635 - 1632422..1632964 (-) 543 WP_136475166.1 DUF2062 domain-containing protein -
  D3Z90_RS07640 comA 1633107..1635329 (+) 2223 WP_136475167.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D3Z90_RS07645 exbB 1635400..1636035 (+) 636 WP_038608555.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  D3Z90_RS07650 - 1636032..1636463 (+) 432 WP_136475168.1 biopolymer transporter ExbD -
  D3Z90_RS07655 lpxK 1636463..1637473 (+) 1011 WP_136475169.1 tetraacyldisaccharide 4'-kinase -
  D3Z90_RS07660 - 1637512..1637697 (+) 186 WP_003247142.1 Trm112 family protein -
  D3Z90_RS07665 kdsB 1637694..1638458 (+) 765 WP_136475170.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  D3Z90_RS07670 - 1638458..1638922 (+) 465 WP_136475171.1 low molecular weight protein-tyrosine-phosphatase -
  D3Z90_RS07675 murB 1638919..1639935 (+) 1017 WP_136475172.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80353.34 Da        Isoelectric Point: 9.3383

>NTDB_id=314941 D3Z90_RS07640 WP_136475167.1 1633107..1635329(+) (comA) [Pseudomonas sp. DG56-2]
MRTGMLALALGLLCLSVLPVLPSVGWLLVMALTAVVCLAWRTYPLGLFFLGLCWACLSAQQALDDRLACELDGRTLWLEG
TVVGLPSQDGRSTRFELQAAQSRRAVLPSRLQLSWFAGPEISSGERWRLAVTLKRPHGLLNPHGPDREATLLARRIGGTG
SVKAGELLAPAQRAWRSDVRQRLLQADAQGREGELIALVLGDGAGLARESWQTLQATGTVHLLVISGQHIGLLAGLVYAL
IALLARLGWWPQALPWLPWACAAAFVTALGYGLLAGFQVPVQRACMMLAVVLLWRLRYRHLGMWVPWLLAFNAVLLWEPL
ASLLPGFWLSFAAVAVLILTFSGRLGAWSAWRAWGRAQWLIALGLLPVLIALGLPVSLTAPLANLFAVPWISLAVLPLAL
LGTVLLPVPVVGQGLIWLAGGLLDGLFRLLGLLAHVQPAWIPEALPWPLWLLMCLGAVSLLLPAGLPMRVLGWPLVMLAV
FAPRERVPEGQLEVWQLDVGQGLALVLRTRQHAMLYDAGPVVGDSDLGERVVLPALRKMGVAKIDLMLLSHADADHAGGA
LALKAGLQVQRVLSGEAAKHAEALQAQPCVSGERWQWDGVSFSLWQWQGAGDSNQASCVLLVEAAGERLLLTGDIDAAGE
QAWLEDWQASRIDWLQAPHHGSRTSSSQALLTATSPRGVLISRGRYNAFGHPHASVMQRYRTSGIEVFDSALHGALRLRL
GTFGEPLKQRSQRRFWRDSS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=314941 D3Z90_RS07640 WP_136475167.1 1633107..1635329(+) (comA) [Pseudomonas sp. DG56-2]
ATGCGCACAGGGATGTTGGCGCTGGCACTGGGCCTTCTATGCCTGAGTGTTCTACCCGTTTTGCCATCGGTCGGGTGGCT
GCTTGTAATGGCCCTGACCGCCGTTGTTTGCCTGGCATGGCGAACGTATCCGCTGGGACTGTTTTTCTTGGGTTTGTGTT
GGGCTTGTCTGTCGGCACAGCAGGCGCTGGATGATCGCCTTGCTTGCGAACTCGACGGTCGCACTCTGTGGTTGGAAGGC
ACCGTTGTTGGTTTGCCGTCGCAAGATGGCCGATCAACACGTTTCGAACTTCAGGCGGCGCAATCCCGGCGCGCTGTATT
GCCATCGCGTCTGCAGTTGAGCTGGTTTGCCGGGCCTGAGATCAGCAGTGGTGAGCGCTGGCGGCTGGCGGTCACCCTCA
AACGTCCCCATGGTTTGCTCAATCCCCACGGGCCTGATCGGGAGGCAACCTTGCTGGCCCGGCGCATAGGCGGCACAGGC
AGCGTCAAGGCTGGCGAGTTGCTGGCTCCCGCCCAGCGGGCCTGGCGCAGCGATGTTCGTCAGCGGTTATTGCAGGCCGA
TGCGCAGGGGCGTGAAGGGGAGCTGATAGCGTTGGTGCTGGGCGACGGTGCAGGCTTGGCGCGCGAAAGCTGGCAAACAC
TGCAGGCCACCGGCACCGTGCACTTGCTGGTCATTTCCGGACAGCATATTGGCCTGTTGGCGGGGCTGGTCTACGCATTG
ATCGCCCTGTTGGCGCGCCTGGGTTGGTGGCCGCAGGCCTTGCCCTGGTTACCTTGGGCGTGCGCGGCGGCGTTTGTGAC
GGCGTTGGGTTATGGCCTTCTGGCAGGCTTTCAAGTGCCGGTGCAGCGAGCGTGCATGATGCTGGCAGTGGTGTTGCTTT
GGCGTTTGCGCTATCGCCATCTAGGCATGTGGGTGCCTTGGTTGTTGGCGTTCAACGCCGTACTGCTGTGGGAGCCTCTG
GCTAGTCTTCTCCCGGGCTTCTGGTTGTCTTTTGCGGCGGTGGCGGTGTTGATTCTTACCTTCAGTGGCCGTTTGGGGGC
CTGGAGTGCATGGCGAGCGTGGGGGCGGGCGCAGTGGTTGATTGCTCTTGGGCTCTTGCCTGTGTTGATCGCGCTGGGGC
TGCCGGTCAGTCTCACAGCGCCGTTGGCCAATCTTTTCGCCGTGCCCTGGATCAGTCTGGCGGTACTGCCGTTGGCGCTG
CTAGGCACTGTTTTATTACCAGTGCCGGTGGTGGGGCAGGGCTTGATCTGGCTCGCCGGTGGCTTACTCGATGGGTTGTT
CCGCTTGCTTGGGTTATTGGCGCACGTGCAGCCGGCATGGATACCTGAAGCTCTGCCGTGGCCGCTGTGGTTGTTGATGT
GTCTGGGGGCGGTGTCGCTGTTGTTGCCCGCGGGCCTGCCAATGCGGGTTCTGGGCTGGCCGCTGGTGATGCTGGCGGTG
TTCGCACCTCGAGAACGAGTGCCTGAAGGGCAATTGGAAGTTTGGCAACTGGACGTCGGACAGGGTTTGGCGTTGGTGTT
GCGGACCCGACAGCACGCAATGCTTTACGACGCCGGGCCTGTGGTCGGTGATTCCGATCTTGGTGAGCGTGTGGTTTTGC
CTGCCTTGCGCAAAATGGGAGTAGCGAAAATCGACTTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGTGGTGCG
TTGGCGCTCAAGGCTGGTTTGCAGGTGCAGCGAGTGCTTAGCGGCGAAGCTGCCAAGCACGCTGAAGCGTTGCAGGCGCA
GCCCTGTGTCAGTGGTGAGCGTTGGCAGTGGGATGGCGTGAGTTTTTCGCTCTGGCAATGGCAGGGCGCAGGCGACAGTA
ATCAGGCATCTTGCGTATTGTTGGTCGAGGCGGCGGGCGAGAGGTTGCTGCTCACTGGCGACATTGACGCTGCTGGCGAA
CAGGCCTGGCTCGAAGACTGGCAGGCGAGCCGTATTGACTGGCTGCAGGCGCCGCACCATGGCAGTCGCACATCTTCGAG
CCAGGCATTGCTGACGGCGACGTCGCCTCGTGGCGTGTTGATCTCCAGAGGTCGTTACAACGCATTTGGCCATCCGCACG
CATCGGTGATGCAGCGCTACCGGACAAGCGGCATCGAAGTATTCGACAGTGCCCTGCATGGCGCCCTGCGCTTGCGCCTG
GGGACGTTTGGCGAACCGCTGAAACAGCGTAGCCAGCGGCGATTCTGGCGCGATTCGAGTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-677)

Competence protein (Competence)

(198-460)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.583

97.297

0.58
  comA Ralstonia pseudosolanacearum GMI1000

34.444

100

0.377

Multiple sequence alignment