Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   D3Z90_RS07645 Genome accession   NZ_CP032311
Coordinates   1635400..1636035 (+) Length   211 a.a.
NCBI ID   WP_038608555.1    Uniprot ID   -
Organism   Pseudomonas sp. DG56-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1630400..1641035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z90_RS07625 - 1630746..1631678 (+) 933 WP_136475164.1 ABC transporter ATP-binding protein -
  D3Z90_RS07630 - 1631675..1632454 (+) 780 WP_136475165.1 ABC transporter permease -
  D3Z90_RS07635 - 1632422..1632964 (-) 543 WP_136475166.1 DUF2062 domain-containing protein -
  D3Z90_RS07640 comA 1633107..1635329 (+) 2223 WP_136475167.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D3Z90_RS07645 exbB 1635400..1636035 (+) 636 WP_038608555.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  D3Z90_RS07650 - 1636032..1636463 (+) 432 WP_136475168.1 biopolymer transporter ExbD -
  D3Z90_RS07655 lpxK 1636463..1637473 (+) 1011 WP_136475169.1 tetraacyldisaccharide 4'-kinase -
  D3Z90_RS07660 - 1637512..1637697 (+) 186 WP_003247142.1 Trm112 family protein -
  D3Z90_RS07665 kdsB 1637694..1638458 (+) 765 WP_136475170.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  D3Z90_RS07670 - 1638458..1638922 (+) 465 WP_136475171.1 low molecular weight protein-tyrosine-phosphatase -
  D3Z90_RS07675 murB 1638919..1639935 (+) 1017 WP_136475172.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22842.04 Da        Isoelectric Point: 6.8759

>NTDB_id=314942 D3Z90_RS07645 WP_038608555.1 1635400..1636035(+) (exbB) [Pseudomonas sp. DG56-2]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWLWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=314942 D3Z90_RS07645 WP_038608555.1 1635400..1636035(+) (exbB) [Pseudomonas sp. DG56-2]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGC
CGAGCGTCTCTGGACCCTGCGCGCCAGCCGGGTTACCCCACCTCACTTGCTGGGTCAGGTGTGGCTGTGGATAAAAGACA
AACAGCTCACCAGTGACAAGCTCAAGGCCCTGCGTGCCGACTCCCCGCTGGGCGAGATCCTGGCTGCTGGCCTGGCGAAC
TCCCGGCATGGTCGCGAAATCATGAAAGAGTGCATCGAAGAGGCGGCGGCTCGAGTCATTCACGAGCTGGAGCGCTACAT
CAATGCCTTGGGCACCATTGCGGCGATGGCGCCGCTGCTCGGCTTGCTCGGTACAGTGCTGGGCATGATCGACATTTTCA
GTGCATTCATGGGTACCGGCATGACCACCAATGCTGCAGTGCTGGCGGGCGGTATCTCCAAGGCGCTGATCACCACCGCT
GCAGGCTTGATGGTCGGTATCCCGTCGGTGTTCTTCCATCGCTTCCTGCAGCGTCGTATCGACGAGTTGGTTGTCGGCAT
GGAGCAAGAAGCCATCAAGTTGGTCGAAGTGGTGCAGGGCGACCGTGATGTCGACCTGGCCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment