Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   E4T63_RS25355 Genome accession   NZ_CP038438
Coordinates   5467854..5468498 (+) Length   214 a.a.
NCBI ID   WP_007966430.1    Uniprot ID   A0ABW8DNZ8
Organism   Pseudomonas fluorescens strain LBUM677     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5462854..5473498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T63_RS25325 (E4T63_25325) - 5462982..5463929 (+) 948 WP_135296674.1 DUF805 domain-containing protein -
  E4T63_RS25330 (E4T63_25330) - 5463991..5464779 (+) 789 WP_027610739.1 SDR family oxidoreductase -
  E4T63_RS25335 (E4T63_25335) - 5464860..5465198 (+) 339 WP_003228789.1 histidine triad nucleotide-binding protein -
  E4T63_RS25340 (E4T63_25340) coq7 5465396..5466043 (+) 648 WP_027610738.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  E4T63_RS25345 (E4T63_25345) speD 5466160..5466954 (-) 795 WP_027610737.1 adenosylmethionine decarboxylase -
  E4T63_RS25350 (E4T63_25350) - 5467192..5467614 (-) 423 WP_003228794.1 OsmC family protein -
  E4T63_RS25355 (E4T63_25355) crp 5467854..5468498 (+) 645 WP_007966430.1 cAMP-activated global transcriptional regulator CRP Regulator
  E4T63_RS25360 (E4T63_25360) - 5468509..5469210 (-) 702 WP_098965890.1 lipoate--protein ligase family protein -
  E4T63_RS25365 (E4T63_25365) trpC 5469348..5470184 (-) 837 WP_097089157.1 indole-3-glycerol phosphate synthase TrpC -
  E4T63_RS25370 (E4T63_25370) trpD 5470181..5471230 (-) 1050 WP_135296675.1 anthranilate phosphoribosyltransferase -
  E4T63_RS25375 (E4T63_25375) - 5471240..5471833 (-) 594 WP_047596412.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24220.10 Da        Isoelectric Point: 8.2373

>NTDB_id=314925 E4T63_RS25355 WP_007966430.1 5467854..5468498(+) (crp) [Pseudomonas fluorescens strain LBUM677]
MVAITPTPKIKNLDKLLMHCQRRRHAAKSNIICAGDRSDTLYFIIKGSVTILIEDDDGREMIIAYLNAGDFFGELGLFEQ
AGQEQQRSAWVRAKVECEIAEISYVKFRELSQQDPDILYVLSGQIAQRLRNTTRKVGDLAFFDVTGRVARCLLELCKQPD
AMTHPDGMQIKVTRQEIGRIVGCSREMVGRVLKDLEERNLVDVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=314925 E4T63_RS25355 WP_007966430.1 5467854..5468498(+) (crp) [Pseudomonas fluorescens strain LBUM677]
ATGGTTGCTATTACCCCCACACCCAAAATCAAGAACCTCGACAAGCTGTTGATGCATTGCCAGCGCCGTCGCCATGCGGC
CAAGAGCAACATCATCTGCGCCGGCGATCGCTCGGACACGCTGTACTTCATCATCAAAGGTTCGGTCACCATCTTGATCG
AAGATGACGACGGCCGCGAAATGATCATCGCCTACCTCAACGCCGGGGACTTCTTCGGCGAGCTGGGTCTGTTCGAACAG
GCAGGCCAGGAACAGCAACGCAGCGCATGGGTGCGGGCCAAGGTCGAATGCGAAATCGCCGAAATCAGCTACGTGAAGTT
CCGCGAACTGTCGCAGCAGGATCCAGACATTCTTTACGTCCTCAGCGGACAAATCGCCCAACGTCTGCGCAATACCACGC
GCAAGGTCGGCGACCTGGCGTTCTTCGACGTTACCGGTCGCGTGGCCCGCTGCCTGCTGGAGCTGTGTAAGCAGCCCGAC
GCGATGACCCACCCGGACGGCATGCAGATCAAGGTGACCCGTCAGGAAATCGGCCGGATTGTCGGTTGTTCGCGGGAGAT
GGTCGGTCGCGTGCTCAAGGATCTTGAAGAACGCAACCTGGTCGATGTGAAAGGCAAGACCATGGTGGTCTTCGGCACGC
GCTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(170-200)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

63.547

94.86

0.603
  crp Haemophilus influenzae Rd KW20

57.921

94.393

0.547
  crp Acinetobacter baumannii D1279779

53.081

98.598

0.523

Multiple sequence alignment