Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   E4T63_RS18350 Genome accession   NZ_CP038438
Coordinates   4002404..4004419 (-) Length   671 a.a.
NCBI ID   WP_007969222.1    Uniprot ID   A0A5C4KRC6
Organism   Pseudomonas fluorescens strain LBUM677     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3997404..4009419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T63_RS18335 (E4T63_18335) gltX 3997873..3999354 (-) 1482 WP_003226448.1 glutamate--tRNA ligase -
  E4T63_RS18340 (E4T63_18340) - 3999584..4000633 (+) 1050 WP_027611523.1 HlyD family secretion protein -
  E4T63_RS18345 (E4T63_18345) - 4000683..4002173 (+) 1491 WP_209318238.1 MDR family MFS transporter -
  E4T63_RS18350 (E4T63_18350) uvrB 4002404..4004419 (-) 2016 WP_007969222.1 excinuclease ABC subunit UvrB Machinery gene
  E4T63_RS18355 (E4T63_18355) - 4004757..4005953 (+) 1197 WP_135296214.1 amino acid aminotransferase -
  E4T63_RS18360 (E4T63_18360) - 4006179..4006379 (+) 201 WP_003226457.1 hypothetical protein -
  E4T63_RS18365 (E4T63_18365) - 4006376..4006606 (-) 231 WP_003226459.1 hypothetical protein -
  E4T63_RS18375 (E4T63_18375) - 4007098..4008621 (-) 1524 WP_135296215.1 nucleobase:cation symporter-2 family protein -
  E4T63_RS18380 (E4T63_18380) - 4008875..4009159 (+) 285 WP_098964664.1 BrnT family toxin -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75961.46 Da        Isoelectric Point: 4.9613

>NTDB_id=314893 E4T63_RS18350 WP_007969222.1 4002404..4004419(-) (uvrB) [Pseudomonas fluorescens strain LBUM677]
MSEFQLVTRFEPAGDQPEAIRQLVEGIEAGLAHQTLLGVTGSGKTFSIANVISQVQRPTLVLAPNKTLAAQLYGEFKAFF
PNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHV
DRGDKLDQRALLRRLADLQYTRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESISAFDPLTGEVIRKMPRF
TFYPKSHYVTPRETLLDAIEHIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRPAGAA
PPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEYGFRLPSALDNRPMRFDEWEGVSPQTIFVSATPGNYEA
EHAGRVVEQVVRPTGLVDPQVEVRPALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITGSME
RAIGETERRRDKQIAFNLENGITPKGVFKDVADIMEGATVPGSRSKKRKGMAKAAEENAKYEAELRSPSEITKRIRALEE
KMYQLARDLEFEAAAQMRDEIAKLRERLLAV

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=314893 E4T63_RS18350 WP_007969222.1 4002404..4004419(-) (uvrB) [Pseudomonas fluorescens strain LBUM677]
ATGTCCGAATTCCAGCTAGTCACCCGCTTCGAGCCCGCCGGCGATCAGCCTGAAGCGATCCGCCAATTGGTCGAGGGCAT
CGAGGCTGGGCTGGCGCACCAGACGCTGCTCGGTGTGACCGGCTCGGGCAAGACCTTCAGCATCGCCAATGTCATCTCGC
AGGTACAGCGCCCGACGCTGGTGCTGGCGCCGAACAAGACCCTCGCCGCGCAGCTGTATGGTGAGTTCAAGGCGTTCTTC
CCGAACAACGCGGTCGAGTATTTCGTTTCCTACTACGACTACTACCAGCCCGAAGCCTATGTGCCGTCGTCCGACACCTT
CATCGAGAAGGACGCGTCGATCAACGACCACATCGAGCAGATGCGCCTGTCCGCGACCAAGGCGTTGCTCGAGCGCAAGG
ACGCGATCATCGTCACCACGGTGTCGTGCATCTACGGTCTGGGTAGCCCGGAAACCTATTTGAAGATGGTGCTGCACGTC
GATCGCGGCGACAAACTCGATCAGCGCGCCTTGCTGCGGCGTCTGGCCGATCTGCAGTACACCCGCAATGACATGGATTT
TGCCCGCGCGACTTTCCGCGTGCGCGGCGACGTGATCGACATCTATCCGGCGGAGTCCGATCTGGAAGCGATCCGCATCG
AACTGTTCGATGACGAGGTCGAGAGCATCTCCGCGTTCGACCCGCTCACCGGCGAAGTCATCCGCAAGATGCCGCGCTTC
ACCTTCTACCCGAAGAGTCACTACGTGACGCCGCGCGAGACCCTGCTCGACGCCATCGAACACATCAAAGTCGAATTGCA
GGAACGCCTCGAATACCTGCGCAGCAACAACAAACTGGTCGAGGCCCAGCGCCTCGAACAGCGCACCCGTTTCGACCTGG
AAATGATCCTCGAACTGGGTTACTGCAACGGCATCGAAAACTACTCGCGCTACCTGTCCGGACGTCCGGCCGGTGCCGCG
CCGCCGACGCTGTATGACTATCTGCCGGCCGACGCCTTGCTGGTGATCGACGAGTCTCACGTCAGCGTGCCGCAAGTCGG
CGCGATGTATAAGGGTGACCGTTCGCGTAAAGAAACCCTGGTCGAATACGGCTTCCGCCTGCCGTCGGCGCTGGACAACC
GGCCGATGCGTTTTGACGAGTGGGAAGGGGTCAGCCCGCAGACCATTTTCGTCTCGGCGACGCCGGGCAACTACGAGGCC
GAGCATGCCGGGCGCGTGGTTGAGCAAGTGGTGCGTCCGACCGGTCTGGTCGACCCGCAGGTTGAAGTGCGTCCGGCGCT
GACCCAGGTTGATGACCTGCTCTCGGAAATCACCAAACGGGTGGCGGTCGAGGAGCGGGTGCTGGTCACCACGCTGACCA
AACGCATGGCCGAAGACCTCACCGATTACCTCGCCGACCACGGCGTGCGCGTGCGTTATCTGCACTCGGACATCGACACC
GTCGAGCGGGTCGAGATTATCCGCGACCTGCGTCTGGGCACCTTCGACGTACTGGTGGGGATCAACCTGCTGCGCGAGGG
TCTGGACATGCCGGAGGTGTCGCTGGTGGCGATTCTCGACGCGGACAAGGAAGGCTTCCTGCGTTCCGAGCGCTCGCTGA
TCCAGACCATCGGCCGGGCCGCGCGTAACCTCAATGGCCGGGCGATTCTCTACGCTGATCGCATCACTGGCTCGATGGAG
CGGGCGATTGGCGAGACCGAGCGTCGTCGCGACAAGCAGATCGCCTTCAACCTGGAAAACGGCATCACGCCGAAGGGTGT
GTTCAAGGACGTCGCCGACATCATGGAAGGCGCCACCGTGCCCGGTTCGCGCAGCAAGAAGCGCAAGGGCATGGCCAAGG
CTGCCGAAGAAAACGCCAAGTACGAAGCCGAACTGCGCTCACCGAGCGAAATCACCAAACGTATTCGCGCGCTGGAAGAG
AAGATGTACCAGTTGGCGCGGGATCTGGAGTTCGAAGCGGCGGCGCAGATGCGCGATGAGATTGCCAAACTGCGTGAGCG
GCTTTTGGCTGTCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(550-591)

UvrB interaction domain (UvrB_inter)

(158-248)

UvrB/uvrC motif (UVR)

(633-666)

Type III restriction enzyme, res subunit (ResIII)

(11-117)

Helicase conserved C-terminal domain (Helicase_C)

(434-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C4KRC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.572

98.957

0.55
  uvrB Streptococcus pneumoniae R6

55.572

98.957

0.55
  uvrB Streptococcus pneumoniae D39

55.572

98.957

0.55

Multiple sequence alignment