Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CDG62_RS18175 Genome accession   NZ_CP032286
Coordinates   3198894..3200462 (+) Length   522 a.a.
NCBI ID   WP_087528360.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHA55     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3193894..3205462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG62_RS18155 (CDG62_18160) - 3194371..3195675 (+) 1305 WP_086209769.1 homoserine dehydrogenase -
  CDG62_RS18160 (CDG62_18165) thrC 3195741..3196880 (+) 1140 WP_004692833.1 threonine synthase -
  CDG62_RS18165 (CDG62_18170) - 3196966..3198021 (-) 1056 WP_162904050.1 serine hydrolase -
  CDG62_RS18170 (CDG62_18175) - 3198237..3198872 (+) 636 WP_004692836.1 response regulator -
  CDG62_RS18175 (CDG62_18180) pilS 3198894..3200462 (+) 1569 WP_087528360.1 sensor histidine kinase Regulator
  CDG62_RS18180 (CDG62_18185) pilR 3200535..3201899 (+) 1365 WP_265936539.1 sigma-54-dependent transcriptional regulator Regulator
  CDG62_RS18185 (CDG62_18190) - 3201904..3203079 (-) 1176 WP_087528362.1 S41 family peptidase -
  CDG62_RS18190 (CDG62_18195) gpmI 3203098..3204645 (-) 1548 WP_087528363.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59689.17 Da        Isoelectric Point: 6.3861

>NTDB_id=314762 CDG62_RS18175 WP_087528360.1 3198894..3200462(+) (pilS) [Acinetobacter sp. WCHA55]
MLKYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSTYQYPILYRSVLIGFIFISAFQLLGLKNVRKRISLQL
TLLFIIDVISLSLLTFATDGPNLQLSLLFVITIFASCVLVDKQKALVITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACTLLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQIPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQANNPQQELLQNMITKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLPDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNADEADHIQIRVYSYKNLVHIEVCDFGEGVATQDQTSLFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=314762 CDG62_RS18175 WP_087528360.1 3198894..3200462(+) (pilS) [Acinetobacter sp. WCHA55]
ATGCTGAAATACTCAACCAATATTCAGTTAAATCAATACCGTCTAGGTGTTTGGTATGCATCTTATCGACTGTTTATTGG
CTGTTGTTTGTTGTTGGTTTATCTGCTGACTTACGAACAGCTATTTTCAACTTATCAGTATCCCATACTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGGGCCTCAAGAATGTGCGCAAACGCATATCACTTCAGCTC
ACCTTGCTGTTTATCATCGATGTTATTAGCCTTAGCTTACTCACTTTTGCCACCGATGGTCCGAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCTTCTTGTGTATTGGTCGATAAACAAAAAGCGCTCGTCATTACGTTGATTGCTGTAA
TAACACTAGTTTATCAGCACTTTATTGGAACGCTATTTTCAATTAGTTCACTGAATACCATCGGCAATAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCAGTACGACGCTTTCAAGTCCTTGAAAACTTAAACTTCTA
TCAATCCCAAGAACTGGACCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTGCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCCGCATGTACATTATTGGGCATCTCACCAATTTATGCCTACGACAAA
TACCCCTTATACAAAGCGCAACCTGATTTATTTGAACTCCTCAAATTCGACCAACTTAAGAATGGAGAAAAGTTCCAATT
CACATCGCAACTGAGTCGCTTTCAAATTCAGATCGAAATTCAAAAACTACAAATACCGAATCAGACACTAACCTTATTCG
TCCTACAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGCATT
GCACATGAAATTCGCAATCCACTGGCAGCCATCACGCAAGCCAATGAACTAATGCAAGCGAATAATCCACAACAAGAACT
GTTGCAGAACATGATTACCAAACAAGCCTCACGGATTGATAAAATTATTGGTGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCGACCCTGATTGATGTTGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGGCAAGTGCTGATTAACCTCATTCG
AAATGCTATTCGACACAATGCAGATGAAGCCGATCACATTCAAATTCGTGTCTATAGCTACAAAAACCTCGTCCATATTG
AGGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGACCAAACCAGCCTATTTCAACCGTTTTTTAGTACCTCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCTCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

60.236

97.318

0.586

Multiple sequence alignment