Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CDG62_RS16460 Genome accession   NZ_CP032286
Coordinates   2835180..2835578 (-) Length   132 a.a.
NCBI ID   WP_228254407.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHA55     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2830180..2840578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG62_RS16430 (CDG62_16435) - 2830252..2830521 (-) 270 WP_010325935.1 HPr family phosphocarrier protein -
  CDG62_RS16435 (CDG62_16440) rapZ 2830518..2831369 (-) 852 WP_087527524.1 RNase adapter RapZ -
  CDG62_RS16440 (CDG62_16445) panC 2831396..2832238 (-) 843 WP_087527525.1 pantoate--beta-alanine ligase -
  CDG62_RS16445 (CDG62_16450) panB 2832242..2833051 (-) 810 WP_087527526.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  CDG62_RS16450 (CDG62_16455) folK 2833088..2833576 (-) 489 WP_087527527.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CDG62_RS16455 (CDG62_16460) pcnB 2833573..2835042 (-) 1470 WP_087527528.1 polynucleotide adenylyltransferase PcnB -
  CDG62_RS16460 (CDG62_16465) comEA 2835180..2835578 (-) 399 WP_228254407.1 ComEA family DNA-binding protein Machinery gene
  CDG62_RS16465 (CDG62_16470) mazG 2835597..2836358 (-) 762 WP_087527530.1 nucleoside triphosphate pyrophosphohydrolase -
  CDG62_RS16470 (CDG62_16475) - 2836477..2837244 (+) 768 WP_087527531.1 SDR family oxidoreductase -
  CDG62_RS16475 (CDG62_16480) - 2837285..2839591 (-) 2307 WP_087527532.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14779.31 Da        Isoelectric Point: 10.8498

>NTDB_id=314753 CDG62_RS16460 WP_228254407.1 2835180..2835578(-) (comEA) [Acinetobacter sp. WCHA55]
MIKIKVSLLIIALLLLSLLAWMPSSYAQSFDQNYLNWKAEQQTWDDRIQASKSVKRAVFPVQAQPVLSTNKVSLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGPFKTIDELQQVRGIGPAIFAKNKARLSL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=314753 CDG62_RS16460 WP_228254407.1 2835180..2835578(-) (comEA) [Acinetobacter sp. WCHA55]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGTTATTACTGAGTTTACTGGCTTGGATGCCCAGCAGTTATGC
ACAATCTTTTGATCAGAATTACCTGAACTGGAAAGCAGAGCAGCAGACGTGGGATGATCGTATTCAAGCGTCCAAGAGCG
TGAAACGTGCTGTGTTTCCTGTTCAGGCCCAACCTGTGTTGAGCACAAATAAAGTTAGTTTAAATCAGGCCAGTGTTGAT
CAATTACAGCAACTTCAGGGTGTGGGCCTAAAAAAGGCGCAGGCAATTGTGGCTTATCGCCAGAAACAAGGGCCATTTAA
GACTATAGATGAGTTACAGCAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAGCCCGTTTAAGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

52.459

92.424

0.485
  comEA Acinetobacter baumannii D1279779

50.806

93.939

0.477
  comEA Acinetobacter baylyi ADP1

44.915

89.394

0.402

Multiple sequence alignment