Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | CDG62_RS04315 | Genome accession | NZ_CP032286 |
| Coordinates | 335196..335669 (+) | Length | 157 a.a. |
| NCBI ID | WP_087527317.1 | Uniprot ID | A0A385N3G6 |
| Organism | Acinetobacter sp. WCHA55 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 330196..340669
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDG62_RS04305 (CDG62_04310) | - | 330534..331256 (+) | 723 | WP_171405702.1 | pilus assembly protein PilX | - |
| CDG62_RS04310 (CDG62_04315) | - | 331268..335182 (+) | 3915 | WP_087527316.1 | hypothetical protein | - |
| CDG62_RS04315 (CDG62_04320) | comE | 335196..335669 (+) | 474 | WP_087527317.1 | type IV pilin protein | Machinery gene |
| CDG62_RS04320 (CDG62_04325) | - | 335670..336128 (+) | 459 | WP_087527318.1 | type IV pilin protein | - |
| CDG62_RS04325 (CDG62_04330) | rpsP | 336274..336531 (+) | 258 | WP_004718284.1 | 30S ribosomal protein S16 | - |
| CDG62_RS04330 (CDG62_04335) | rimM | 336560..337108 (+) | 549 | WP_087527319.1 | ribosome maturation factor RimM | - |
| CDG62_RS04335 (CDG62_04340) | trmD | 337136..337876 (+) | 741 | WP_087527320.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| CDG62_RS04340 (CDG62_04345) | rplS | 338017..338388 (+) | 372 | WP_004974529.1 | 50S ribosomal protein L19 | - |
| CDG62_RS04345 (CDG62_04350) | - | 338449..339420 (-) | 972 | WP_087527321.1 | esterase/lipase family protein | - |
| CDG62_RS04350 (CDG62_04355) | - | 339592..340545 (-) | 954 | WP_087527322.1 | lipase family alpha/beta hydrolase | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17136.28 Da Isoelectric Point: 5.1843
>NTDB_id=314734 CDG62_RS04315 WP_087527317.1 335196..335669(+) (comE) [Acinetobacter sp. WCHA55]
MKQTINSSGFTLIELMVVVVIVAIFAAIAIPSYQEYVRRAVASQAQQEVQRLATLLDRHKARNFSYRGFTTTSAVLPVGA
TGSAIKYTLTIRDGNDPDLDLTDDEAAGRNWAIQAVSSDDKNYTMLLTSTGMRCKNKTTANVDFESCGSTANGSEEW
MKQTINSSGFTLIELMVVVVIVAIFAAIAIPSYQEYVRRAVASQAQQEVQRLATLLDRHKARNFSYRGFTTTSAVLPVGA
TGSAIKYTLTIRDGNDPDLDLTDDEAAGRNWAIQAVSSDDKNYTMLLTSTGMRCKNKTTANVDFESCGSTANGSEEW
Nucleotide
Download Length: 474 bp
>NTDB_id=314734 CDG62_RS04315 WP_087527317.1 335196..335669(+) (comE) [Acinetobacter sp. WCHA55]
ATGAAACAAACAATAAACTCCTCTGGGTTTACATTGATTGAGTTAATGGTTGTTGTAGTAATTGTTGCGATTTTCGCAGC
AATTGCTATACCGTCATACCAAGAGTATGTGCGCCGCGCGGTCGCTAGCCAGGCACAACAAGAGGTGCAGCGATTAGCGA
CTTTATTAGACCGACATAAAGCGCGTAATTTTAGTTATCGAGGATTTACGACGACAAGTGCAGTATTACCCGTAGGCGCA
ACTGGCTCTGCGATTAAATATACATTGACGATCAGAGATGGAAATGATCCAGATTTAGATTTAACAGATGATGAAGCGGC
AGGTCGGAATTGGGCCATTCAAGCTGTGAGTTCGGACGATAAGAATTATACGATGCTACTTACGAGTACAGGGATGCGTT
GTAAGAATAAAACTACAGCAAATGTTGACTTTGAGAGCTGTGGCAGTACTGCAAATGGTAGTGAGGAGTGGTAA
ATGAAACAAACAATAAACTCCTCTGGGTTTACATTGATTGAGTTAATGGTTGTTGTAGTAATTGTTGCGATTTTCGCAGC
AATTGCTATACCGTCATACCAAGAGTATGTGCGCCGCGCGGTCGCTAGCCAGGCACAACAAGAGGTGCAGCGATTAGCGA
CTTTATTAGACCGACATAAAGCGCGTAATTTTAGTTATCGAGGATTTACGACGACAAGTGCAGTATTACCCGTAGGCGCA
ACTGGCTCTGCGATTAAATATACATTGACGATCAGAGATGGAAATGATCCAGATTTAGATTTAACAGATGATGAAGCGGC
AGGTCGGAATTGGGCCATTCAAGCTGTGAGTTCGGACGATAAGAATTATACGATGCTACTTACGAGTACAGGGATGCGTT
GTAAGAATAAAACTACAGCAAATGTTGACTTTGAGAGCTGTGGCAGTACTGCAAATGGTAGTGAGGAGTGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Acinetobacter baylyi ADP1 |
50 |
100 |
0.529 |
| pilY2 | Acinetobacter baumannii D1279779 |
49.032 |
98.726 |
0.484 |