Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | ECSP_RS06830 | Genome accession | NC_013008 |
| Coordinates | 1397086..1397562 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli O157:H7 str. TW14359 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1392086..1402562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECSP_RS06805 (ECSP_1321) | - | 1393364..1394269 (+) | 906 | WP_000203541.1 | diguanylate cyclase regulator RdcB family protein | - |
| ECSP_RS06810 (ECSP_1322) | - | 1394266..1395336 (+) | 1071 | WP_000102669.1 | patatin-like phospholipase family protein | - |
| ECSP_RS06820 (ECSP_1323) | - | 1395676..1396494 (+) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| ECSP_RS06825 (ECSP_1324) | - | 1396585..1397070 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| ECSP_RS06830 (ECSP_1325) | radC | 1397086..1397562 (+) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| ECSP_RS06835 (ECSP_1326) | - | 1397625..1397846 (+) | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| ECSP_RS06845 (ECSP_1328) | - | 1398009..1398383 (+) | 375 | WP_001280954.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| ECSP_RS06850 (ECSP_1329) | - | 1398430..1398804 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| ECSP_RS06855 (ECSP_1330) | - | 1398801..1399292 (+) | 492 | WP_000976853.1 | DUF5983 family protein | - |
| ECSP_RS06860 (ECSP_1331) | - | 1399304..1399501 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| ECSP_RS06865 (ECSP_1332) | - | 1399586..1400428 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| ECSP_RS06875 (ECSP_1334) | ghrA | 1400899..1401837 (+) | 939 | WP_000351284.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=31441 ECSP_RS06830 WP_001186738.1 1397086..1397562(+) (radC) [Escherichia coli O157:H7 str. TW14359]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=31441 ECSP_RS06830 WP_001186738.1 1397086..1397562(+) (radC) [Escherichia coli O157:H7 str. TW14359]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |