Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ANAEK_RS19450 Genome accession   NC_011145
Coordinates   4359535..4360020 (+) Length   161 a.a.
NCBI ID   WP_012527836.1    Uniprot ID   -
Organism   Anaeromyxobacter sp. K     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4354535..4365020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANAEK_RS19435 (AnaeK_3862) - 4355364..4356488 (+) 1125 WP_012527833.1 Gfo/Idh/MocA family protein -
  ANAEK_RS19440 (AnaeK_3863) - 4356558..4357016 (-) 459 WP_041454270.1 Fur family transcriptional regulator -
  ANAEK_RS19445 (AnaeK_3864) dacB 4357174..4359429 (+) 2256 WP_232288283.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  ANAEK_RS19450 (AnaeK_3865) ssb 4359535..4360020 (+) 486 WP_012527836.1 single-stranded DNA-binding protein Machinery gene
  ANAEK_RS19455 (AnaeK_3866) - 4360170..4360949 (+) 780 WP_041454118.1 DUF4253 domain-containing protein -
  ANAEK_RS23655 (AnaeK_3867) - 4361139..4364042 (+) 2904 WP_012527838.1 tetratricopeptide repeat protein -
  ANAEK_RS19465 (AnaeK_3868) - 4364068..4364748 (+) 681 WP_012527839.1 haloacid dehalogenase type II -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 16847.46 Da        Isoelectric Point: 6.4816

>NTDB_id=31441 ANAEK_RS19450 WP_012527836.1 4359535..4360020(+) (ssb) [Anaeromyxobacter sp. K]
MVNRVILVGNLGKDPEVRYTSGGQAVANLRIATSRSWTDKQSGQRKEETEWHDVEVWGKQAEQCGEYLAKGRQVYVEGRL
KTDKWQDKQSGQERSKVKVVAETVRFLGGGGGAGRGAGGPGRQHGPDDGPPGGFEEPDSGPGPGFGGGGGGGGGGPDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=31441 ANAEK_RS19450 WP_012527836.1 4359535..4360020(+) (ssb) [Anaeromyxobacter sp. K]
ATGGTGAACAGGGTCATCCTCGTCGGGAACCTCGGGAAGGATCCGGAGGTCCGGTACACGTCCGGCGGCCAGGCGGTCGC
GAACCTCCGCATCGCCACCTCCCGCTCCTGGACCGACAAGCAGTCCGGGCAGCGCAAGGAGGAGACGGAGTGGCACGACG
TCGAGGTCTGGGGGAAGCAGGCCGAGCAGTGCGGTGAGTACCTCGCGAAGGGCCGCCAGGTCTACGTCGAGGGCCGGCTC
AAGACCGACAAGTGGCAGGACAAGCAGTCCGGCCAGGAGCGCTCGAAGGTGAAGGTGGTCGCCGAGACCGTCCGGTTCCT
GGGCGGTGGCGGCGGCGCCGGCCGCGGCGCCGGCGGCCCCGGCCGCCAGCACGGCCCCGACGACGGTCCTCCGGGCGGCT
TCGAGGAGCCGGATTCCGGGCCTGGTCCCGGCTTCGGCGGTGGTGGGGGCGGCGGCGGCGGTGGGCCGGACGACATCCCG
TTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.505

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.41
  ssb Glaesserella parasuis strain SC1401

50

75.776

0.379

Multiple sequence alignment